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Detailed information on CNT30688654


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555040Triticum urartuOryza glaberrima15.5927.199.09219forward

Expression of CNT30688654

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MKEKGLRIRKTKEAWRADYKTTTTIQAMSDSEAFSLFFRKPHN*

>peptide 2 (41 aa)
MGNSLLKDPAQCPLPSPAAFRPKGVYNFFFRTLMPDRETAC*

>peptide 3 (78 aa)
MAERRWQAVIWIRCFTRRRFSSSRKNCMGVVLGGTSRMTVPGNSTVLRAAMVVDPAEPTQRFRPDCRKWVIRFCISMRR

>peptide 4 (56 aa)
MRPRSRSLRSIFLIGRLYLYGEFAAERSRPVSPSFPRRLPTKGSIQFLLQDTHARS*

Sequence

>CNT30688654
TTTGACCAACGGGTCCTCGAACCCATGGGGGTTACGAATCATTCATTCATTGATTGATTCAAGGTAGCTTTAGCCATTGTGGGTAGAAGCTAGTCGCCAG
AAGCGAAGCAGCGATCTTCCGGGCCGGAAAAGTTCTATTTTTCTGACGCGTAAGCTACCGCAAAATGAATGAAGGAAAAAGGCCTCAGGATTAGAAAGAC
TAAAGAGGCATGGAGGGCCGACTACAAGACTACGACTACAATACAAGCCATGAGCGATAGCGAAGCCTTCAGCCTTTTTTTTCGAAAGCCCCACAACTAG
CTATCTTATAGCAGATAAGGCAAGCCTACTCAACTAATCTCATGTAAACGCCTGTTCGCTAAAATCCAAATAGAAAAAGACAACTACTTATTAAACATGT
AGTTGAGTGCTCCGTCGTGTTCGGATCTTGACCGAGTCCGAGCTTCCCAAGCTCTATGCTATTTGGGAACTCAGCAAGGGTCTTACCACCTTCTTGATTG
ACTATATTTGAGTCTTTGGGGTACCTTTTAGGATTATATTCCGTGCCGAAGATTTGTGCTTGTGGGCTAGGGTGAATATAGCGGACCAGCGGATCTGGTT
ATTGACAATCGTTCGGACTTGGTAAAGGTTGTCGCAGCACCTGTAGTAGGACAGAGGACTTATCGCGATGCCCGCGGACCAATTTACTATGTCTCTGTCG
CTGACGTTGGTCAAAGAGCCACGTGGATTGGCCTGGGTCTTCTTCGGCTAATGAGACCTCGATCCCGAAGCCTTCGGAGTATCTTTTTGATAGGGCGCCT
CTATCTGTATGGGGAATTCGCTGCTGAAAGATCCCGCCCAGTGTCCCCTTCCTTCCCCCGCCGCCTTCCGACCAAAGGGAGTATACAATTTCTTCTTCAG
GACACTCATGCCCGATCGTGAGACTGCCTGTTGAACGCCTGATGGCACCTTGCTCTGACCTGAGCTATGCAACAACGAGATCCCCCTCGATCTTTGCCGG
ATGTGCTTGACGGTCCCCCATAATACGCTAACTTGGGGACTTTTTAGTCCATCTTTTCCAAGAGTCTCCGCTAGTTGAACCGCGTCCAGTAGACGACCTC
TTCCGCTCATCCCCTTCGTCAGCTCTTTGATAGGGATACTATAACCTAGGTCCCTAAACTTGGAATGGATGGCGGAGCGTAGGTGGCAGGCAGTTATATG
GATACGGTGCTTTACCCGTAGACGCTTCTCCAGCTCTCGCAAGAATTGTATGGGAGTCGTCCTCGGGGGGACTTCCCGAATGACCGTACCGGGGAATTCT
ACCGTACTCCGTGCAGCTATGGTTGTTGATCCTGCGGAGCCTACCCAAAGGTTCAGACCGGATTGTAGGAAGTGGGTGATACGTTTTTGTATTTCTATGA
GAAGA