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Detailed information on CNT30688208


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FLC0|PER52_ARATH, E-value = 1e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694715Triticum urartuOryza sativa25.399.7782.4797forward
CNT30673938Triticum urartuSetaria viridis29.0646.2590.99111forward
CNT30183751Triticum urartuSecale cereale27.4911.9584.76105forward
CNT30307233Triticum urartuTriticum aestivum97.1256.4796.23371forward
CNT30554242Triticum urartuOryza glaberrima28.0122.2986.92107forward
CNT30348098Triticum urartuEragrostis tef94.544.486.98361forward
CNT30368355Triticum urartuSorghum bicolor89.0160.3987.65340forward
CNT30150580Triticum urartuBrachypodium distachyon20.6810.9786.0879forward
CNT30102121Triticum urartuOryza rufipogon43.4621.0186.75166forward
CNT30583621Triticum urartuEchinochloa crusgalli51.8329.0781.82198forward

Expression of CNT30688208

Peptides detected in this lncRNA

>peptide 1 (43 aa)
AVLPHQRVLRPAVEELLVRVQEAALPHKVPVVGVVEPVGGLHV*

>peptide 2 (30 aa)
LYCLTSASCDPPLKSSWSECRRPRCPTRFR*

>peptide 3 (52 aa)
MRLRKNWHCDRPMVCAPESAVMSPGDRFLLPNMVMSVARLEPGPGRFALAKEG

Sequence

>CNT30688208
TGCTGTACTGCCTCACCAGCGCGTCCTGCGACCCGCCGTTGAAGAGCTCCTGGTCCGAGTGCAGGAGGCCGCGCTGCCCCACAAGGTTCCGGTAGTAGGC
GTTGTCGAACCCGTCGGCGGTCTGCACGTCTAATGGCGCGAGGTTGCTGTCTCCGCCGGACCGCGGGCACGTCCGCTGCCGCAGCGCCGCGAAGCTGGCG
TTGATGTTGCGCTCGTTGTAGATGCGGTTACGGAAGAACTGGCACTGCGACCGCCCGATGGTGTGCGCGCCGGAGAGCGCCGTCATGTCCCCCGGCGACA
GGTTCTTGTTGCCGAACATGGTGATGAGCGTGGCGAGGCTGGAGCCGGGGCCCGGGAGGTTCGCGTTGGCCAAGGAAGGGCG