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Detailed information on CNT30687044


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 5e-50

BLAST vs NONCODE:
NONBNAT006984, E-value = 4e-18

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317753Triticum urartuCorylus avellana29.3442.9680.6299forward
CNT30703567Triticum urartuQuercus lobata18.6537.6284.74190forward
CNT3069058Triticum urartuQuercus suber22.8726.6381.97233forward
CNT30712284Triticum urartuGlycine max14.8232.1380.13151forward
CNT30186872Triticum urartuSecale cereale31.1163.5396.21317forward
CNT30299936Triticum urartuTriticum aestivum31.2158.2496.86318forward
CNT30219776Triticum urartuHordeum vulgare23.8557.7295.47243forward
CNT30394717Triticum urartuTriticum turgidum31.2163.196.86318forward
CNT30441099Triticum urartuAegilops tauschii31.1161.4395.9317forward
CNT30252143Triticum urartuAvena sativa30.2329.7994.81308forward
CNT30357929Triticum urartuLactuca sativa24.3455.3682.66248forward
CNT30645456Triticum urartuCannabis sativa20.2226.8686.41206forward
CNT3024855Triticum urartuPopulus trichocarpa26.54680270forward
CNT30325970Triticum urartuAsparagus officinalis22.6733.4884.85231forward
CNT30331117Triticum urartuDioscorea rotundata27.2829.3679.86278forward

Expression of CNT30687044

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MRFTPPRRARRRIAGLVMPWMLSRSTFRWRLAPPLPSPFPPLPRPDILELTEMEMEEELWRRRLLV

>peptide 2 (41 aa)
MNTTTRQRVATSTNPVVQDGSSWPGPARPSRRIRRGCVPGA*

>peptide 3 (40 aa)
MLRFPFRQYTQTTNKSSANSSEMQPLHRGHEHHHQTTRSY*

Sequence

>CNT30687044
CAAACACATGTTTAACGCTTCACCAGTTAACACTAATAACTTGATAGTACGCAAGTCACAACAAAACAAATAGTTCAACAAAAAAAATGTACTACTCCAC
TAAACTAACATGGGCACATACTGCACAAGTTCGACATCACAGGTAGCTCAAACACATTCTAGCTAGGGATATAACTCCAGCACTACAAGTTCTACATCAC
GATAGAGGAACAAAACAACTCCCAACACTTGACCTTCTTCGGCCTGAATCCACCAAAACACTGAAGCCAACAAAATAAGATTTGGTTTGAGAATCCAGCA
AACACCGAAGCCAACACAAACAGGATTCGGGGGCAGAAATTTACAAAACGAGGCAATGGGGATTTTTTTCGATGATCGAGGCAATGGGGATTGAAGAAAG
CACTGGTAATATCTGACCGCACGCACGAACAAACATCGACAGAGCCACAGATTCCATACGAATTCAGGGGTAAAATGCTGCGATTTCCATTCCGTCAGTA
CACCCAAACAACAAACAAGTCCAGCGCGAACAGCAGCGAGATGCAGCCATTACACCGAGGACATGAACACCACCACCAGACAACGCGTAGCTACTAGCAC
TAATCCGGTGGTGCAAGACGGATCCTCCTGGCCTGGACCAGCGCGGCCTAGCCGCCGAATCCGTAGAGGGTGCGTCCCTGGCGCTTGAGGGCGTAGACGA
CATCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCGCGGATGACGTTCTCCAGGAAGATCTTGAGCACGCCGCGGGTCTC
CTCGTAGATCAGCCCCGAGATGCGCTTCACGCCGCCCCGCCGCGCCAGACGACGGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCCCGGAGCACCTTC
CGGTGGCGCTTGGCGCCGCCCTTGCCGAGCCCCTTCCCGCCCTTGCCGCGGCCGGACATCTTGGAGCTGACTGAGATGGAAATGGAGGAGGAGCTGTGGC
GGCGGCGGCTGCTGGTGCT