Detailed information on CNT30686076


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6PL11|SKP1_ORYSJ, E-value = 7e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695831Triticum urartuOryza sativa30.612.2984.8886forward
CNT30671810Triticum urartuSetaria viridis18.8621.4688.6853forward
CNT30317831Triticum urartuCorylus avellana54.4531.2986.93153forward
CNT30516841Triticum urartuJuglans regia56.5819.6386.16159forward
CNT30500911Triticum urartuCoffea canephora30.616.683.7286forward
CNT30628805Triticum urartuVigna unguiculata27.0514.2386.8476forward
CNT30303239Triticum urartuTriticum aestivum27.7637.8698.7278forward
CNT30400944Triticum urartuTriticum turgidum33.137.895.793forward
CNT30589619Triticum urartuMusa acuminata50.1855.0890.78141forward
CNT30555334Triticum urartuOryza glaberrima54.4546.6596.73153forward
CNT30666847Triticum urartuTriticum dicoccoides27.430.9298.777forward
CNT30143075Triticum urartuLolium perenne61.2116.3592.44172forward
CNT30650073Triticum urartuRosa chinensis35.5917.2188100forward
CNT30348724Triticum urartuEragrostis tef48.7515.6996.35137forward
CNT30365074Triticum urartuSorghum bicolor55.5223.8291.67156forward
CNT30592775Triticum urartuEragrostis curvula44.1350.4189.52124forward
CNT30112966Triticum urartuFicus carica29.5412.3987.9583forward
CNT3049296Triticum urartuCucumis sativus30.9636.5583.9187forward
CNT30114991Triticum urartuEutrema salsugineum54.4515.179.74153forward

Expression of CNT30686076

Peptides detected in this lncRNA

>peptide 1 (92 aa)
ADLLWGLALDHVGNSLAVLDDLGEDLGVDVGERDAVVGAVVLDHVADRLRLHGHRLLHLELLAVRALERDHLLLAGVSRGRHRSLLLLPPPDP

>peptide 2 (92 aa)
RISSGVLPLIMSATVWQYSMTLERILELTLGSGMPLSAQSSSIMWRIVCDSMATASSTSNSSPSELLSVIIFFSPASPAAAIARCCCCRRRIR

Sequence

>CNT30686076
TGCGGATCTCCTCTGGGGTCTTGCCCTTGATCATGTCGGCAACAGTCTGGCAGTACTCGATGACCTTGGAGAGGATCTTGGAGTTGACGTTGGGGAGCGG
GATGCCGTTGTCGGCGCAGTCGTCCTCGATCATGTGGCGGATCGTCTGCGACTCCATGGCCACCGCCTCCTCCACCTCGAACTCCTCGCCGTCCGAGCTC
TTGAGCGTGATCATCTTCTTCTCGCCGGCGTCTCCCGCGGCCGCCATCGCTCGCTGCTGCTGCTGCCGCCGCCGGATCCGG