Detailed information on CNT30684236


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 3e-170

BLAST vs NONCODE:
NONGMAT000778, E-value = 3e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Triticum urartuSetaria viridis45.1357.8892.18371forward
CNT30316236Triticum urartuCorylus avellana28.7151.4283.47236forward
CNT30547574Triticum urartuIpomoea triloba28.2265.3586.21232forward
CNT30512729Triticum urartuJuglans regia67.6454.0382.55556forward
CNT30372986Triticum urartuArabidopsis thaliana42.8234.4482.1352forward
CNT30379936Triticum urartuManihot esculenta29.6873.0586.07244forward
CNT30488117Triticum urartuOlea europaea28.3547.7585.41233forward
CNT3045373Triticum urartuPrunus dulcis39.1741.0781.37322forward
CNT30510505Triticum urartuSolanum lycopersicum51.4638.9584.87423forward
CNT30309793Triticum urartuCamelina sativa4143.3283.98337forward
CNT3059659Triticum urartuArabidopsis lyrata26.6450.4683.56219forward
CNT30612508Triticum urartuArabis alpina45.8614.8581.43377forward
CNT30135610Triticum urartuLolium perenne51.9550.4790.4427forward

Expression of CNT30684236

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MTVRQDFSRTVSRKETTGGETIISAPPMKSSCRSFKQISR*

>peptide 2 (53 aa)
SDRGVICSLRPFLLRISVTSVADWVPGSKGSEAMMSQCGVPCLCISSNTCPLF*

>peptide 3 (54 aa)
MLVGGLAHDSAAGLLQNSLTEGDDRRGNNNFSTTHEVLLQILQTDFKVKLSSSSN

>peptide 4 (97 aa)
MPRMFSSHSAPSFDAHWNPATTESLISFRYCTPLHMSTTMLGPVVSGPKHQIFLARSLSQPNSSDRILERTLGSSRGPMRPSSIASASPSSNGRASM*

Sequence

>CNT30684236
TCGGATAGGGGGGTCATCTGCTCCTTGAGACCCTTCCTCTTGCGGATCTCCGTCACGAGCGTCGCCGACTGGGTGCCGGGGTCCAAAGGATCGGAGGCCA
TGATGTCCCAGTGTGGGGTACCTTGCCTCTGCATCTCCTCGAACACGTGCCCTCTCTTCTGATTCAGCACACCATAGATACCACCAAGTGCGTTCTCCGG
GGCCTGGATCTCAACCAGGTACACGGGCTCCAGCAGCCTTGGCTTGGCAGTGAGCTGAGAAGCGTAAATGACCCTCCTCGCCGTTGGGATGACCTGACCA
CCGCCCCTGTGAATAGCATCAGTGTGGAGAACAACATCACAGACCTCATAGCAGATGCCGCGCATGTTCTCCTCACATAGTGCTCCTTCTTTTGATGCCC
ACTGGAACCCAGCCACAACAGAGTCCTTGATTTCATTCAGGTACTGCACTCCCTTACACATGTCCACAACCATGTTGGGGCCAGTCGTCTCAGGTCCAAA
GCACCAAATCTTCTTGGCAAGATCCTTGTCCCAACCAAACTCCTCAGACAGGATCTTGGAGCGCACCTTAGGATCATCACGTGGGCCAATGCGGCCATCA
TCAATAGCCTCAGCCAGTCCCTCCTCCAATGGGCGAGCTTCCATGTAGAGACGGTTATGCTTGTTGGGGGACTTGCTCATGACAGTGCGGCAGGACTTCT
CCAGAACAGTCTCACGGAAGGAGACGACAGGAGGGGAAACAATAATTTCAGCACCACCCATGAAGTCCTCCTGCAGATCCTTCAAACAGATTTCAAGGTG
AAGCTCTCCAGCTCCAGCAATG