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Detailed information on CNT30684130


BLAST search results

BLAST vs Swiss-Prot:
sp|P27807|H2B1_WHEAT, E-value = 1e-57

BLAST vs NONCODE:
NONGMAT000269, E-value = 6e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Triticum urartuOryza sativa54.3462.2488.83394forward
CNT30671720Triticum urartuSetaria viridis37.9361.2591.27275forward
CNT30523142Triticum urartuSetaria italica5678.0891.63406forward
CNT30518328Triticum urartuJuglans regia37.6652.784.98273forward
CNT30702570Triticum urartuQuercus lobata18.0726.290.08131forward
CNT30618877Triticum urartuSesamum indicum38.0735.0781.88276forward
CNT30526697Triticum urartuPhaseolus vulgaris17.7949.0587.6129forward
CNT30632073Triticum urartuVigna unguiculata27.3126.3383.33198forward
CNT30196132Triticum urartuPisum sativum17.7927.2286.82129forward
CNT30301816Triticum urartuTriticum aestivum52.9755.2598.18384forward
CNT30220656Triticum urartuHordeum vulgare46.4855.6196.74337forward
CNT30565715Triticum urartuActinidia chinensis38.0735.1685.87276forward
CNT30586986Triticum urartuMusa acuminata35.3172.3290.23256forward
CNT3086649Triticum urartuVigna radiata36.6935.6683.08266forward
CNT30552027Triticum urartuOryza glaberrima4053.895.52290forward
CNT30171046Triticum urartuTrifolium pratense38.0777.7579.71276forward
CNT30435700Triticum urartuAegilops tauschii69.6671.0393.07505forward
CNT30244799Triticum urartuAvena sativa63.1763.7993.23458forward
CNT30597299Triticum urartuFraxinus excelsior27.1735.8881.22197forward
CNT30455806Triticum urartuSaccharum spontaneum63.4553.6191.74460forward
CNT30130711Triticum urartuLolium perenne38.0740.5997.46276forward
CNT30606042Triticum urartuGossypium raimondii19.0345.2585.51138forward
CNT30722585Triticum urartuTriticum spelta42.2141.7596.73306forward
CNT30346527Triticum urartuEragrostis tef24.4183.8998.31177forward
CNT30363575Triticum urartuSorghum bicolor64.1450.4391.4465forward
CNT30596761Triticum urartuOryza meridionalis54.6250.1386.36396forward
CNT30359864Triticum urartuLactuca sativa16.4128.7485.71119forward
CNT30570929Triticum urartuVitis vinifera3638.981.61261forward
CNT3052765Triticum urartuAmborella trichopoda18.2125.9887.88132forward
CNT30327286Triticum urartuAsparagus officinalis37.7930.3191.97274forward
CNT30149313Triticum urartuBrachypodium distachyon17.5236.3996.06127forward
CNT30103076Triticum urartuOryza rufipogon26.3431.6794.76191forward
CNT30557628Triticum urartuPanicum hallii50.2165.3592.58364forward

Expression of CNT30684130

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMMDMALEEMPMSGCTCFSTLKM*

Sequence

>CNT30684130
ACTTCCATCCAGCACTAGCACTACTTCTACTTGGCGATAACCAGAGTGAACAACCACATCTGGTACTAGATACAGGCAACGGAATCTAAGAGGAGGTGAA
CTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCCCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGGGAGGTGAACTTG
GTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCCCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGCT
TCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCC
GATGTCGGGGTGCACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTAGGTCTCCACGCTCTTCTTGCCCTTCTTCCGGCCCCTCTTCTCGCCGCCGCCC
TCCTTGGAGGCGGTCTTCTTGCCCGCCGGCAGCCGCTTCTCGGCCTTGGGCTTCTTCCCGGCAGGGGTCTTCTCGGCCTTCTCCGCCGCGGGCTCCTCCT
CCGCGGGCTTCTTCGCCGCCGGCTTCTTCTCCGCCTTGGGGGCCATCGCTGCTCCGGGAAGATGGGTGGGGATTGGGGGCTACGGTGGAGAGTTGTGTGC
AGGGGAAGGTGGGTGGCGGATATGG