Detailed information on CNT30683583


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30361540Triticum urartuSorghum bicolor63.4857.889.29252forward
CNT30595951Triticum urartuOryza meridionalis23.1742.7993.4892forward
CNT30100642Triticum urartuOryza rufipogon24.1815.7693.7596forward
CNT3050887Triticum urartuCucumis sativus27.237.8982.41108forward

Expression of CNT30683583

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAPTIRAQSPSLPLLPGRDLDLEPWISLFL

>peptide 2 (44 aa)
DAPSSPHVIVATNRLAITHEAKVHCRANELTVKGHERPRWGHPP*

>peptide 3 (44 aa)
MVGITMSSSSLSSGVDGTDDPGTVTVPAIAAWPGSRSRALDLAVP

>peptide 4 (63 aa)
MRDRGGGTLPKAEGVSTDKVRTFTVGVIQGVEEKRGGTAGRRGATSRGSRDCGWSGSRCPARP*

Sequence

>CNT30683583
GACGCACCATCCAGCCCACATGTCATCGTAGCGACCAATAGGCTGGCCATCACCCATGAGGCCAAAGTACATTGCAGGGCCAATGAGCTGACGGTCAAAG
GCCATGAGAGACCGCGGTGGGGGCACCCTCCCTAAGGCTGAAGGGGTATCCACGGACAAAGTCCGCACCTTCACGGTAGGGGTCATACAAGGTGTTGAAG
AAAAACGGGGTGGTACGGCTGGAAGAAGGGGCGCCACATCTCGAGGAAGTCGAGATTGCGGATGGTCGGGATCACGATGTCCAGCTCGTCCTTGAGCAGC
GGCGTTGATGGCACCGACGATCCGGGCACAGTCACCGTCCCTGCCATTGCTGCCTGGCCGGGATCTCGATCTCGAGCCCTGGATCTCGCTGTTCCTG