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Detailed information on CNT30682006


BLAST search results

BLAST vs Swiss-Prot:
sp|P60113|ATP9_BRANA, E-value = 7e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193721Triticum urartuSecale cereale31.6699.3297.93290forward

Expression of CNT30682006

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MFFLRCSFLDFLLMIRSTWACTSIIFKYWVMRTTNLIHIITICKAYHILKKMSCGLKIIRYRYR*

>peptide 2 (34 aa)
MCKKPKIAYWGSVGEKSLLPTSASKGQPFLLIHM*

>peptide 3 (52 aa)
QIGRPIYGPREQDIDFFTYVTTFSHFFFDLMTFYVIRKRMRSERPSLGQTMQ*

>peptide 4 (33 aa)
MARKSIFNNYVQKAQNSLLGFSWREKPSSYICE*

Sequence

>CNT30682006
ATCAGATAGGACGCCCCATCTATGGACCAAGAGAACAAGATATTGACTTTTTTACATATGTAACTACATTCTCACATTTCTTTTTTGATCTCATGACTTT
TTATGTGATCAGAAAACGAATGAGATCAGAAAGGCCATCATTGGGGCAAACAATGCAATAGCTTCGGTGAGAGCAAAGCCCAAAATGGCATAACCAAATG
ATTGTTTAGCCAATGATGGATTTCGCGCCACGGAATGAATCAAAGAACTGAGGAAGTTTCCAATACCGACAGCAGCTCCGGCTAAAGCAATTGTAGCAGC
TCCGGCACCTATTGATTTAGCACCTTCTAACATCTCGAGTCGAGAAAACACTTTTCTTGTCATGTTTTTCCTTCGCTGTTCTTTCTTGGATTTCTTGTTG
ATGATTCGAAGTACTTGGGCCTGCACCTCCATAATTTTCAAATATTGGGTTATGCGGACCACTAATTTGATACATATTATCACAATTTGCAAGGCTTATC
ACATATTAAAGAAAATGAGCTGTGGATTGAAAATCATCAGGTATAGGTATAGGTAGGGGGTCCGTCAACCCTTGTGGGGCTGGGTGGGGTATCCTAAACT
ACTGGAGCAGCTCCCCCTTGTGACTGGGGTAGACTCTCAGCAGCTTGGTTTACGCATGGCACGAAAATCTATCTTTAATAATTATGTGCAAAAAGCCCAA
AATAGCCTATTGGGGTTCAGTTGGCGAGAAAAGCCTTCTTCCTACATCTGCGAGTAAGGGGCAACCTTTTTTATTAATTCACATGTAAGGCAAAGTGCTT
TCTTTTAAAGAAGCATCTTGTTCCATCTTTCTTTCGTTAGTTAAGCCACCTTTTTCTAAGAAGGATTTTTGTAATTCAGGATTAATAGTACTTAGAATGG
CTTTTTCATATTGGGA