« Back to Triticum urartu search


Detailed information on CNT30681497


BLAST search results

BLAST vs Swiss-Prot:
sp|P85084|CHIT_CARPA, E-value = 6e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30245838Triticum urartuAvena sativa9.2725.1790.5474forward
CNT30130634Triticum urartuLolium perenne34.4624.6283.27275forward
CNT30103592Triticum urartuOryza rufipogon9.0223.7686.1172forward

Expression of CNT30681497

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MRAGWGRDRSISCPTRTATPALARSSFPAYGPSGAAGHPPVVSWEVCPRKASYV*

>peptide 2 (60 aa)
PVSNTVILPPTALEPAVDDVGDDAIPRHPASSVVRARWGPLACDHGMGRRLVRLSRHPKP*

>peptide 3 (54 aa)
IRLATRSSCPLPHSSPPLMMLVMTPYPGTRPAALSVPDGVHWPVITAWDDGLFA*

Sequence

>CNT30681497
ATCCGGTTAGCAACACGGTCATCCTGCCCCCTACCGCACTCGAGCCCGCCGTTGATGATGTTGGTGATGACGCCATACCCAGGCACCCGGCCAGCAGCGT
TGTCCGTGCCCGATGGGGTCCATTGGCCTGTGATCACGGCATGGGACGACGGCTTGTTCGCCTGAGCCGTCATCCAAAACCATAACGCCGTCTTAAACGA
CACCGTCGCGTCCGTGGCGACCAGGTCCGGGTTGTTGAGCAGGTCCACCCCGATGGCACGCCCCGCGGGGCCATAGTTGTAGTTCCATGAGAGCTGGATG
GGGCCGCGACCGTAGTATTTCTTGCCCGACACGCACGGCCACTCCGGCTTTGGCTCGCAGTAGCTTCCCGGCGTACGGTCCATCGGGCGCCGCGGGCCAC
CCGCCAGTGGTCTCGTGGGAGGTCTGCCCGAGGAAGGCGTCGTACGTGTAGAACCCGCGGGCCTCTTGGCAGTCGTTGCGGTGGAGGAGGAGCCGCTCGA
AGAGGTCCCTGGAGATGATGGACGACACGCCCCCGCCGGGGCTGGGGCCGGGAGGGGTGGGGCCGCAGCCGCTGCACTGGCTCTGACAGCCGGCTCCGCA
GTAGGCGTCGCCGCTGCCGCAGTACCCGAATTTGCTGCAGCAGAGACAGTTTGCGCACGTCGCGCCGCCAGCCTGCGAGCCGCACTGCTGGGCGTCCACG
GCTGTGGCGAGTGCCGCCGCCACAACCATGGCCAGGATGGCCACCACCCTCGGGGCTCTCAGTACCGTGGGCATGTATGACTTCATGATCGATCTTGG