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Detailed information on CNT30680601


BLAST search results

BLAST vs Swiss-Prot:
sp|Q05855|PER1_WHEAT, E-value = 1e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180112Triticum urartuSecale cereale92.8232.5395.05323forward
CNT30221499Triticum urartuHordeum vulgare37.9345.3684.85132forward
CNT30387601Triticum urartuTriticum turgidum89.6637.6495.19312forward
CNT30348949Triticum urartuEragrostis tef19.8332.5586.9669forward
CNT30596630Triticum urartuOryza meridionalis20.989.5187.6773forward
CNT30370682Triticum urartuOryza glumipatula21.269.1690.5474forward
CNT30117210Triticum urartuOryza nivara21.2610.6990.5474forward
CNT30604331Triticum urartuOryza punctata20.9810.687.6773forward

Expression of CNT30680601

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVCAPESATMSTVLRFFLRNAASSCDRLELGPGRSLFASEALAVVESRL

>peptide 2 (38 aa)
WSCPGSPGWCSRRCRTRWASSCPGSPGWCCRRTGGSWP*

>peptide 3 (71 aa)
RGRVQVRQVGVVGVVERVGRRRVQVRQVGVAAGLGAVGLERCREDSVDVGVTAVDPSPKVGALGLPDGVRA*

Sequence

>CNT30680601
CGTGGTCGTGTCCAGGTTCGCCAGGTTGGTGTAGTAGGCGTTGTCGAACGCGTTGGGCGTCGTCGTGTCCAGGTTCGCCAGGTTGGTGTTGCCGCCGGAC
TGGGGGCAGTTGGCCTTGAGAGATGTCGCGAAGACAGTGTTGATGTTGGTGTCACCGCCGTAGATCCGAGTCCGAAAGTTGGAGCACTGGGCCTTCCCGA
TGGTGTGCGCGCCTGAGAGCGCGACCATGTCGACCGTGTTAAGGTTCTTCTTGAGGAACGCGGCCTCGAGCTGTGACCGGCTAGAGCTCGGGCCAGGGAG
GTCACTGTTCGCCAGCGAGGCACTTGCGGTGGTGGAGTCCCGTCTCCC