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Detailed information on CNT30680595


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SW70|SRP_VITRI, E-value = 1e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520677Triticum urartuSetaria italica16.4926.8589.1156forward
CNT30286948Triticum urartuTriticum aestivum63.5378.5698.17601forward
CNT30221689Triticum urartuHordeum vulgare40.3876.486.13382forward
CNT30386184Triticum urartuTriticum turgidum92.8180.4898.41878forward
CNT30437252Triticum urartuAegilops tauschii38.1610093.35361forward
CNT30658060Triticum urartuTriticum dicoccoides78.86100.1398.53746forward
CNT30596560Triticum urartuOryza meridionalis21.2528.7685.57201forward
CNT30102674Triticum urartuOryza rufipogon9.5138.7992.2290forward
CNT30577004Triticum urartuOryza barthii21.2533.7885.57201forward
CNT30117268Triticum urartuOryza nivara16.9123.0990.62160forward
CNT30556599Triticum urartuPanicum hallii11.7322.290.99111forward

Expression of CNT30680595

Peptides detected in this lncRNA

>peptide 1 (34 aa)
GRTQLHWIKSTKATSSNFLYKSTENIRDAHHTKA*

>peptide 2 (35 aa)
MPVSSLALDPHYLIQFRPRATYLVHQGMIAARRHT*

>peptide 3 (31 aa)
MRSMGMPGRNRAPGNPRPAANEITLLYLSHQ*

>peptide 4 (36 aa)
DEPNCIGSSRRRRHQATFCTKARRTLETRTTQKHSS*

Sequence

>CNT30680595
GGACGAACCCAATTGCATTGGATCAAGTCGACGAAGGCGACATCAAGCAACTTTTTGTACAAAAGCACGGAGAACATTAGAGACGCGCACCACACAAAAG
CATAGTAGCTAGTACAACATCATTATCATTAGCATCACCCGTGAGCACGTATCTAGGACACTAAACCCAGGATGCCAGTATCTTCTTTAGCCCTGGATCC
ACATTATCTTATTCAGTTCCGGCCAAGGGCGACATACCTCGTCCACCAGGGCATGATAGCGGCACGGCGGCACACCTAGGCCTGGGCCCCAAGATCCATA
GTCTTGGCCGCCTCCGGCTGGCTCTCCCCGGCGGTCTGGGCGTCAGATTCCACAGGCTTGGCATCCGGCGAGCTCTCCTCCGCGGTCTGCGCATCAGGTC
CCACAGCCTTGGCATCGGGCGAACGCTCCTCGGAAGTCTGGGCATCCAGTCCCATAGGCTTGGCATCGGACGAGCGCTCCTCGGAGGTCTGGGCATCAAG
TCCCGTCGGCTTGGCATCCGGCGAGCGCTCCCCGGCCGAGTTCGTCCCGAACGCCTTGGCGATGCGCTCGATGGGGATGCCGGGGAGGAACCGTGCGCCG
GGGAACCCCCGCCCGGCCGCGAACGAGATCACCCTGTTGTACTTGTCGCACCAGTAGGCGGCGGTGGGCACGACGATGTGCGCCACCTGCGGGAACACCG
GCAGCCCGTTGAGCGAGCGCCAGGCGGAGACGGCGAGGTGCTCGGCCGCCGGCTCGTAGCGCGCGTACAGGTCCTTGGCCACCGGCTGGACCATCCCGTA
CACGTCCTTGGCCACGCCCTTCACGCCGGACCGCCTCGCCCCGTCGGCGATCTCCCTGGCCAGCTCCGGCACGGCGTGGACCGCGTGGGACGCCTGCGCC
GACGCGGACTTGACCGCCGGCGGGAGGTGCCGGCCCAGCTCATGCA