Detailed information on CNT30680544


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39096|ERD15_ARATH, E-value = 8e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694940Triticum urartuOryza sativa36.8232.6590.5395forward
CNT30672185Triticum urartuSetaria viridis75.5835.6585.64195forward
CNT30520324Triticum urartuSetaria italica78.2930.6586.14202forward
CNT30221871Triticum urartuHordeum vulgare87.9898.790.75227forward
CNT30436523Triticum urartuAegilops tauschii45.3517.799.15117forward
CNT30450016Triticum urartuSaccharum spontaneum85.2719.9186.36220forward
CNT30352666Triticum urartuEragrostis tef52.7116.8191.18136forward
CNT30325402Triticum urartuAsparagus officinalis26.365.9388.2468reverse complement
CNT30147603Triticum urartuBrachypodium distachyon42.2536.5888.07109forward
CNT30100764Triticum urartuOryza rufipogon41.0939.2690.57106forward
CNT30496542Triticum urartuDigitaria exilis87.2120.2585.78225forward

Expression of CNT30680544

Peptides detected in this lncRNA

>peptide 1 (84 aa)
WFVVVEVGLGLGRRRGVEEVVGVEQVDGVVGEEGGDVVLVELVLAEPVVAEPGGGLDQLPPLGRVVLHLLERRRDEHGRVRVQRR

>peptide 2 (56 aa)
LVCSGRSRAGAGATAGSRRGRRRRAGRRSRRGGGRRRRPRRAGAGGTSGRGTRRWS*

Sequence

>CNT30680544
GCTGGTTTGTAGTGGTAGAAGTCGGGCTGGGGCTGGGGCGACGGCGGGGAGTAGAAGAGGTCGTCGGCGTCGAGCAGGTCGACGGAGTCGTCGGGGAGGA
GGGCGGCGACGTCGTCCTCGTAGAGCTGGTGCTGGCGGAACCAGTGGTCGCGGAACCAGGCGGTGGTCTTGACCAGCTCCCACCACTCGGGCGAGTAGTC
CTCCACCTTCTTGAACGCCGCCGGGATGAACATGGGCGCGTCCGGGTTCAGCGCCGAC