Detailed information on CNT30680164


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XFT3|PSBQ1_ARATH, E-value = 5e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671430Triticum urartuSetaria viridis20.1251.9893.13131forward
CNT30520717Triticum urartuSetaria italica26.7323.8489.66174forward
CNT30179895Triticum urartuSecale cereale27.567.2998.32179forward
CNT30385644Triticum urartuTriticum turgidum99.5482.9798.15648forward
CNT30554363Triticum urartuOryza glaberrima37.4810.1691.39244forward
CNT30659718Triticum urartuTriticum dicoccoides47.6245.5997.42310forward
CNT304156Triticum urartuZea mays30.5749.2687.94199forward
CNT30351417Triticum urartuEragrostis tef18.1354.8891.53118forward
CNT30362913Triticum urartuSorghum bicolor27.966585.71182forward
CNT30370617Triticum urartuOryza glumipatula33.798088.64220forward
CNT30148624Triticum urartuBrachypodium distachyon32.7250.7195.31213forward
CNT30581445Triticum urartuEchinochloa crusgalli36.5634.3990.76238forward
CNT30496557Triticum urartuDigitaria exilis28.7379.5789.3187forward
CNT30117138Triticum urartuOryza nivara30.8816.7189.55201forward

Expression of CNT30680164

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MEKLTPVSPAILLEKMFRFDAVRIKMAMFLKRHKVIAEIARW*

>peptide 2 (36 aa)
MTYGHCFLSMSGLRLRMSWADSLARTAASAGGSGCR*

Sequence

>CNT30680164
ATGTTTACTCTTCATATGACTGATCTCAAGATAGAATCATACTTAAGTGCTTGTTGACATATTATCAACAGGGAAGTTACATTGCCGGCTTCCAAATATG
AACAAACATAAAAGGCCTGAAAGCAACACGGCCATTATGCGGATCCATCTAGCCTAGCTTGGCGAGGACATCGCTGAGAACAGTCTTGGTCTCGCCGTAG
TACTTCTCGGCCTCGGTGGGGCTCTTGATCTTGGCTGCATGGTCAAGCTGCAAACAAAATGGAGAAGCTCACACCTGTTAGTCCTGCAATTCTTCTTGAG
AAAATGTTCAGGTTTGATGCAGTAAGAATTAAGATGGCCATGTTTCTGAAGAGACATAAGGTAATAGCTGAAATTGCGAGATGGTAGGTTTCTTACCCCG
TCGAGGGTGGCGAAGAGCTTGCCGGTGAGGTCCTTGAGGTCGTAGCGCAGGTAGGAGGCCCTGAGGCGGAGGTCGTTCATGACGTACGGCCATTGCTTCT
TGTCGATGAGCGGCTTGAGGTTGAGGATGTCCTGGGCCGACTCCTTGGCCCGCACCGCCGCCTCCGCCGGTGGCAGCGGCTGCAGGTAGAACCGGTTCTT
CAGGGGCAGGTCGAAGTCCCTTGCCTCGTCCGAGTTGTCCGTTCCGGCTGA