Detailed information on CNT3068000


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695785Leersia perrieriOryza sativa34.5418.1688.71124forward
CNT30555806Leersia perrieriOryza glaberrima25.0721.8484.4490forward
CNT30347168Leersia perrieriEragrostis tef28.696.4388.35103forward
CNT30102866Leersia perrieriOryza rufipogon25.0714.5484.4490forward
CNT30577336Leersia perrieriOryza barthii34.545.6488.71124forward
CNT30551516Leersia perrieriOryza brachyantha33.9816.6986.07122forward

Expression of CNT3068000

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MYKWEGSANPLKADGNHKGSELVYDLSTS*

>peptide 2 (31 aa)
QNPASSSPDAAYHFFEICQQHMESLVCCSKI*

>peptide 3 (45 aa)
MAITRDQSWCMIYLQAKSIQQRNSALDQSPEQSFEFALKINDVQLQ

>peptide 4 (70 aa)
RILPVHLLMLPIIFLRSASSIWNLSYVVQKFNALPSIFQVCNHIVMSQLLATRTSSKSITCTNGKDQQIL*

Sequence

>CNT3068000
CAGAATCCTGCCAGTTCATCTCCTGATGCTGCCTATCATTTTTTTGAGATCTGCCAGCAGCATATGGAATCTCTCGTATGTTGTTCAAAAATTTAATGCA
CTGCCATCTATCTTCCAGGTGTGCAATCACATAGTCATGTCCCAACTATTGGCAACAAGAACCAGCAGTAAGTCTATAACATGTACAAATGGGAAGGATC
AGCAAATCCTCTAAAAGCGGATGGCAATCACAAGGGATCAGAGTTGGTGTATGATCTATCTACAAGCTAAGAGCATTCAACAGCGAAACTCTGCTCTGGA
TCAATCTCCTGAACAAAGCTTCGAATTTGCTCTCAAGATCAACGATGTCCAACTCCAAC