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Detailed information on CNT30679384


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 7e-52

BLAST vs NONCODE:
NONGMAT000508, E-value = 2e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671259Triticum urartuSetaria viridis41.5861.6195.24252forward
CNT30523218Triticum urartuSetaria italica52.1557.8893.35316forward
CNT30318271Triticum urartuCorylus avellana43.0726.3180.84261forward
CNT30549690Triticum urartuIpomoea triloba30.6944.2986.56186forward
CNT30617135Triticum urartuSesamum indicum48.6829.4184.07295forward
CNT30178072Triticum urartuSecale cereale71.9580.4493.12436forward
CNT30283432Triticum urartuTriticum aestivum86.810099.81526forward
CNT30221015Triticum urartuHordeum vulgare40.5946.6895.53246forward
CNT30383650Triticum urartuTriticum turgidum72.2845.3999.77438forward
CNT3086297Triticum urartuVigna radiata47.8524.9483.79290forward
CNT30255927Triticum urartuAvena sativa51.1646.4894.84310forward
CNT30655811Triticum urartuTriticum dicoccoides86.310099.62523forward
CNT3059678Triticum urartuArabidopsis lyrata26.5733.4783.85161forward
CNT30261175Triticum urartuBrassica rapa35.9746.1980.28218forward
CNT30471244Triticum urartuSaccharum spontaneum52.1533.0295.89316forward
CNT30135649Triticum urartuLolium perenne51.8261.2195.86314forward
CNT30720165Triticum urartuTriticum spelta25.2532.6295.42153forward
CNT30348363Triticum urartuEragrostis tef51.6556.1995.21313forward
CNT30370989Triticum urartuOryza glumipatula46.745.2893.64283forward
CNT30147953Triticum urartuBrachypodium distachyon51.4935.994.23312forward
CNT30101647Triticum urartuOryza rufipogon50.532.8395.42306forward
CNT30496126Triticum urartuDigitaria exilis51.8246.1893.63314forward

Expression of CNT30679384

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MSPEMRFTPPLRARRRIAGLVMPWMLSRSTFLWRLAPPLPSPLPPLPRPDMVADELALVRAARNCRIGGVVVIGAG

>peptide 2 (37 aa)
FALQKKQQSHTNRDIAGQPARQNSETRCILISNSRCE*

>peptide 3 (73 aa)
FCITEETAIAHKQRYSRPTSETKFRNTVYIDFQLQMRVALFHDSLGTTEEVANHTSRGIIKLLGSAGEGRGSA*

Sequence

>CNT30679384
TTTTGCATTACAGAAGAAACAGCAATCGCACACAAACAGAGATATAGCAGGCCAACCAGCGAGACAAAATTCAGAAACACGGTGTATATTGATTTCCAAC
TCCAGATGCGAGTAGCTTTGTTTCACGATTCACTTGGAACTACAGAGGAAGTAGCAAACCACACAAGTCGCGGTATCATCAAGCTTTTGGGATCTGCAGG
GGAGGGGCGAGGAAGCGCCTAGCCGCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGGGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGG
GCGTGCTCGGTGTAGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGGACGCCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCTTCA
CGCCGCCCCTCCGAGCGAGGCGCCGGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGGAGCACCTTCCTGTGGCGCTTGGCGCCGCCCTTGCCGAG
CCCCTTGCCTCCCTTGCCGCGCCCGGACATGGTCGCCGACGAACTCGCCTTGGTTCGAGCTGCGAGAAATTGTCGGATTGGAGGAGTGGTGGTGATTGGT
GCGGGG