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Detailed information on CNT30679142


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677535Triticum urartuSetaria viridis14.3169.8685.62146forward
CNT30283765Triticum urartuTriticum aestivum43.5399.3397.97444forward
CNT30384857Triticum urartuTriticum turgidum31.6776.1894.12323forward
CNT30435716Triticum urartuAegilops tauschii63.4384.4697.22647forward
CNT30239672Triticum urartuAvena sativa41.1857.6184.76420forward
CNT30361318Triticum urartuSorghum bicolor15.8826.8282.1162forward
CNT30596940Triticum urartuOryza meridionalis11.0826.6592.04113forward
CNT30149646Triticum urartuBrachypodium distachyon36.6769.6584.22374forward
CNT30103572Triticum urartuOryza rufipogon24.2223.1986.23247forward
CNT30577940Triticum urartuOryza barthii23.823086.01243forward

Expression of CNT30679142

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MRTKYIQMHMSTHVNQHEQSQTRKVDNISKDRQPIKKTMNINKL*

>peptide 2 (42 aa)
MNADQYNLRKPTDIFFPLQESQPVMEKLHTLHSFRFPMKTMR*

>peptide 3 (36 aa)
MQISITYANLRIFFSLFRNPNQLWKNCIHYTVSGFQ*

>peptide 4 (67 aa)
MVYRWQVSHMMHRWLVFHMVDHWLVFHMVDHWLVFHIVDHWQVFHTVNHWQARMVDQWQAAFDMGNH*

>peptide 5 (59 aa)
MVMIRTMRHIISTRTNRQGHFSSRQASRCCISIIRSRWWSVASKWTSTRILSSFREIIY*

Sequence

>CNT30679142
TGAAGAGTGAAATTTGAATCTATTCAGCACTGAAGCAAATGAGAACCAAATATATTCAGATGCACATGTCCACGCATGTGAATCAGCATGAACAGAGCCA
GACAAGGAAAGTTGATAATATAAGTAAAGACCGTCAACCAATCAAGAAAACAATGAACATCAACAAGTTATAGTGCACAGAAGTGACAGCTAGAATGATA
TGAATGCAGATCAGTATAACCTACGCAAACCTACGGATATTTTTTTCCCTCTTCAGGAATCCCAACCAGTTATGGAAAAATTGCATACACTACACAGTTT
CAGGTTTCCAATGAAAACTATGAGGTGAGGGCCATTTGCAAAACAGGGGAACTGACGCATTAAACTGTACCTCAGTGTAATCATAAGCATTGGAATTTCC
GGCTCTGGTGACGCCTAATTGTTGCATATTACTATTCCCAGCTCTTGAGAGGCCTAATTGCTGCATGCCTCTACTAGAATAGCTATCAGTAGGCATATGG
TCATGATAAGAACGATGCGACATATAATCAGCACCAGGACTAACAGGCAAGGGCATTTCTCTAGTAGGCAAGCGAGCAGATGCTGCATATCTATCATAAG
AAGCAGATGGTGGAGCGTCGCTAGCAAATGGACTTCCACTAGGATACTCTCTTCTTTTAGAGAAATAATCTACTGAATCATGGGGTTTATTGTTTGGTCT
CCCATATGGTGTATCGTTGGCAGGTCTCCCATATGATGCATCGTTGGCTGGTCTTCCATATGGTGGATCATTGGCTGGTCTTCCATATGGTGGATCATTG
GCTGGTCTTCCATATAGTGGATCATTGGCAGGTCTTCCATACAGTGAATCACTGGCAAGCCCGTATGGTTGATCAATGGCAAGCCGCCTTTGATATGGGG
AATCATTAGCAGGCCTTCCATAAGGGGTATCATTAGCAGGCCTTCCATAAGGGGTATCATTGGCAAGCCTTCCATATGGTGGATTGGCAGGTCTTCCATA
CAGTGTGAAATCCCTGCTAG