Detailed information on CNT30678671


BLAST search results

BLAST vs Swiss-Prot:
sp|O22347|TBA1_ELEIN, E-value = 6e-74

BLAST vs NONCODE:
NONGMAT000220, E-value = 9e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071006Setaria viridisQuercus suber36.9962.1182300forward
CNT30712809Setaria viridisGlycine max40.0797.0185.23325forward
CNT3075301Setaria viridisBrassica juncea36.1355.1884.98293forward
CNT30716286Setaria viridisMalus domestica golden40.0724.8987.08325forward
CNT30360524Setaria viridisLactuca sativa40.0750.781.85325forward
CNT30104286Setaria viridisOryza rufipogon26.8832.5992.66218forward

Expression of CNT30678671

Peptides detected in this lncRNA

>peptide 1 (69 aa)
TRNITGLLIQKRSRTKQVSYNIRCCKRHTTTDNSSNRHTDTQQDKIGATRADHRITAAHRPDTAAGSIV*

>peptide 2 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

>peptide 3 (30 aa)
MLPSTSLTEEGVESIITSSNGLVAGHLAISL

>peptide 4 (40 aa)
MRSTKTARGTCFPAPVSLKKVLKASSPPPTVLSPGIWPSA*

Sequence

>CNT30678671
ACACGAAACATAACAGGATTATTAATCCAGAAACGAAGCAGGACTAAACAAGTTTCTTACAACATAAGATGTTGTAAACGACATACGACGACAGATAACA
GTTCAAACCGACACACCGACACACAACAAGATAAGATAGGAGCCACTCGGGCAGATCATAGGATAACCGCGGCACACAGGCCTGACACAGCAGCAGGAAG
CATCGTCTAGTACTCGTCACCCTCGTCTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCCTCGTAGTCCTTCTCGAGCGCAGCCAGGTCCTCACGG
GCCTCAGAGAACTCGCCCTCCTCCATGCCCTCACCCACGTACCAGTGAACGAAGGCACGCTTGGCGTACATGAGGTTGGTGTAGGTGGGGCGCTCAATGT
CAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGCAGAACAGCAACATCAGTGTGCTCGAGGAGGGAGTGGGTGGACAGGACACTGTTGTA
TGGCTCAACCACTGAGGTGGAGACCTGGGGAGATGGGTACACAGTGAACCCGAGCTTGGACTTCTTGCCATAGTCAACAGACAGACGCTCAAGGAGGAGA
GAACCAAGACCAGAGCCTGTTCCTCCACCAACAGCATTGAAGACAAGGAAGCCCTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGATGCGGTCAACAA
AAACAGCACGGGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCTCCAACGGTCTTGTCGCCGGGCATCTGGCC
ATCAGCCTGAA