Detailed information on CNT30678474


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695004Setaria viridisOryza sativa25.7510.0482.48137forward
CNT30445586Setaria viridisSaccharum spontaneum44.7425.7995.8238forward
CNT30351991Setaria viridisEragrostis tef44.7436.8492.44238forward
CNT30596300Setaria viridisOryza meridionalis42.6712.5688.11227forward
CNT30105631Setaria viridisOryza longistaminata13.3533.4992.9671forward
CNT30101734Setaria viridisOryza rufipogon42.6722.7288.99227forward
CNT30575498Setaria viridisOryza barthii22.1818.8293.22118forward

Expression of CNT30678474

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MESDINLKLTKPLDPTHHAYANRVANTTQNTKSGRAHPFSKLNS*

>peptide 2 (33 aa)
ETRNTFRPFNLQKHTHINFFSQRGVISSVQPWN*

>peptide 3 (30 aa)
MPMDSYRAHVGSALYKRLTSPFSRAINCRL*

Sequence

>CNT30678474
ACGAAACAAGAAATACATTTCGGCCCTTTAACTTACAAAAACACACACACATAAACTTTTTTTCTCAGCGTGGTGTCATCTCTTCTGTGCAACCATGGAA
TTGAATGAACAAATGACCCGTTGCAGTGCACCTCATGGAATCTGACATCAACTTGAAGCTCACTAAACCTCTTGATCCCACTCATCATGCATATGCCAAC
AGAGTAGCCAACACAACCCAGAATACTAAAAGTGGGAGGGCCCATCCCTTTTCGAAGCTGAACAGCTGAGTGATATTATCAAAGTTTGGATGCTGAGCGA
CTAAGTTCCACTGCGTGTAATTCATGCGGAAGTTGAAGTTGGTGATAGTGATTTTCACTCTCCAGTATTCCTTGTAGTTGAGCTTCACATGCCAATGGAT
TCTTATCGGGCACATGTGGGAAGTGCATTGTACAAGAGGCTGACCAGTCCATTTTCCAGGGCCATCAATTGCAGATTGTAGATTAGGTGAAAAACTTTGT
CGGCCTGCCAACAATGGCACGCCCACATGTGT