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Detailed information on CNT30678417


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Setaria viridisOryza sativa5018.6292.12165forward
CNT30522336Setaria viridisSetaria italica28.1835.0910093forward
CNT30296550Setaria viridisTriticum aestivum20.316.0392.5467forward
CNT30589025Setaria viridisMusa acuminata5036.7580165forward
CNT30553163Setaria viridisOryza glaberrima501292.12165forward
CNT30439764Setaria viridisAegilops tauschii49.0934.6988.89162forward
CNT30447830Setaria viridisSaccharum spontaneum27.8816.0895.6592forward
CNT301613Setaria viridisZea mays49.0928.4295.68162forward
CNT30683907Setaria viridisTriticum urartu49.0924.6688.89162forward
CNT30361641Setaria viridisSorghum bicolor50.314.196.99166forward
CNT30369879Setaria viridisOryza glumipatula5022.9892.12165forward
CNT30147849Setaria viridisBrachypodium distachyon50.337.6487.95166forward
CNT30100699Setaria viridisOryza rufipogon49.0914.7391.98162forward
CNT30575527Setaria viridisOryza barthii29.0915.2192.7196forward
CNT30579178Setaria viridisEchinochloa crusgalli46.6712.5785.06154forward
CNT30116295Setaria viridisOryza nivara29.0910.1992.7196forward
CNT30603857Setaria viridisOryza punctata26.069.8995.3586forward

Expression of CNT30678417

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MPSTPRRSVLNTVRQTWREMSGRMLKRVRLNSCTAA

>peptide 2 (73 aa)
MREGRVARTGRARGGAPGRGGRDGDVAGGLHHHAGRAHHAQHAAEIGVEHRAADVEGDVRAHVEEGAAELLHRR

>peptide 3 (29 aa)
FFYSHGLATHSNGAGRAIFDSWQGVKPRR*

Sequence

>CNT30678417
AGTTCTTCTACAGTCATGGATTGGCAACACACAGCAACGGCGCGGGTCGCGCCATTTTTGATTCTTGGCAAGGGGTAAAACCGAGGCGGTAAAAGATACC
GATCGCCATGAGGGAGGGGCGTGTCGCTAGAACCGGGCGAGCGCGCGGCGGAGCACCTGGGCGAGGAGGCCGGGACGGAGACGTCGCGGGTGGTCTGCAC
CACCACGCAGGGAGAGCGCACCATGCCCAGCACGCCGCGGAGATCGGTGTTGAACACCGTGCGGCAGACGTGGAGGGAGATGTCCGGGCGCATGTTGAAG
AGGGTGCGGCTGAACTCCTGCACCGCCGCG