Detailed information on CNT30678235


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005134, E-value = 2e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522059Setaria viridisSetaria italica10062.1499.67302forward
CNT30189491Setaria viridisSecale cereale37.7541.1684.21114forward
CNT30224680Setaria viridisHordeum vulgare93.7141.9383.04283forward
CNT30553869Setaria viridisOryza glaberrima72.5241.1783.56219forward
CNT30448340Setaria viridisSaccharum spontaneum90.449.8292.67273forward
CNT30149Setaria viridisZea mays89.449.0990270forward
CNT3067447Setaria viridisLeersia perrieri90.7348.582.48274forward
CNT30595883Setaria viridisOryza meridionalis55.329.5685.63167forward
CNT30105638Setaria viridisOryza longistaminata55.318.0786.23167forward

Expression of CNT30678235

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTQLSPLKYTRRGKAHPFSKVKVWESLRRSSSPC

>peptide 2 (50 aa)
MESDINLKLTKPLDPTHHAYANRVANTTQNTKSGRVSGCFVRGLALGNHG*

Sequence

>CNT30678235
AATGAACAAATGACCCGTTGCAGTGCACCTCATGGAATCTGACATCAACTTGAAGCTCACTAAACCTCTTGATCCCACTCATCATGCATATGCCAACAGA
GTAGCCAACACAACCCAGAATACTAAAAGTGGGAGGGTCAGCGGTTGTTTTGTTAGAGGGCTTGCGTTGGGCAACCATGGATAGTTTTCAGGAGATGGCA
TGACACAGTTGTCACCATTGAAGTACACTCGGCGTGGGAAGGCCCATCCCTTTTCGAAGGTGAAAGTCTGGGAGTCCTTGCGGAGAAGCAGTTCGCCCTG
CA