« Back to Leersia perrieri search


Detailed information on CNT3067791


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SUQ8|DIR6_ARATH, E-value = 3e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694742Leersia perrieriOryza sativa33.3324.9383.71264forward
CNT30102762Leersia perrieriOryza rufipogon33.3333.2984.09264forward
CNT30576993Leersia perrieriOryza barthii11.2441.5988.7689forward
CNT30551414Leersia perrieriOryza brachyantha11.2431.3487.6489reverse complement

Expression of CNT3067791

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MNCGVEHDGEGEPRVGRQLLGVVQVQPLRPHRRLLQRRWQRLPLRHRVVEHRHRSEHGCVLHCRQ*

>peptide 2 (46 aa)
MRSSLPTVVTPVRRPPPTWSWWCCCCSRRGCCGSRTSSACTASRSHS

>peptide 3 (44 aa)
CGGIYFILIYLLNFFKLFHNYLDGMNIWIDIHRVLKIHFTITVV*

Sequence

>CNT3067791
TTTGTGGAGGGATATATTTCATATTAATATATCTTCTCAATTTTTTTAAATTATTTCATAACTATTTAGATGGCATGAACATATGGATTGACATCCACCG
GGTGCTTAAAATCCATTTCACCATAACAGTGGTATAAGTGGAGAGTGGTAATTTGAGGCAAATATACTAATACATACTCCCCTCTCTTTTATGTAAGCGT
CATATTTATAAAAGTGGTGGTGAGTATAATTTCCATAGATTAACATCAAATTATTTTAAAACAGATTTTGACAATTTTAATATCCATTCAAATGTAGCAT
TCGTAGAGCTTGATGTCCATCAGCAACCGAAAATAGGGAATCCCCCTTGCATCGTCGGCTTGCACCGTGGCGATGCCGCGTGCCATGAAGAAGTCACCGG
TGCCACCGACGATGGATAAGTCCTTTGTCTTCTGGTAGACGATGTCGGCGCCGATGATGTTGAGTGTGCCGTGTCCATGAACTGTGGAGTTGAACACGAC
GGAGAAGGCGAACCACGCGTTGGCAGGCAACTTCTTGGTGTCGTACAAGTACAGCCCCTGCGCCCGCACCGCCGTCTCCTCCAGCGACGGTGGCAGCGAC
TTCCCCTCCGTCATCGGGTCGTTGAACACCGTCACCGTTCCGAACACGGATGCGTTCTTCATTGCCGACAGTAGTGACGCCGGTGAGGCGACCACCGCCG
ACGTGGAGTTGGTGGTGCTGTTGTTGTAGTCGTAGAGGATGTTGTGGAAGTAGAACCTCATCTGCTTGCACGGCGAGTCGTAGTCATAGCTC