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Detailed information on CNT30677735


BLAST search results

BLAST vs Swiss-Prot:
sp|O82392|THIC_ARATH, E-value = 6e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522056Setaria viridisSetaria italica55.8239.999.75403forward
CNT30727441Setaria viridisCorchorus capsularis42.2450.581.64305forward
CNT3094458Setaria viridisSolanum tuberosum48.6168.1681.48351forward
CNT30340692Setaria viridisEragrostis tef33.2466.4888.75240forward

Expression of CNT30677735

Peptides detected in this lncRNA

>peptide 1 (62 aa)
VDLPSSFTMLFPTDCFPCSQKFSTHSIHSFLHSFLYCSVTMFICIFSNILCDFHRTKLGPTH*

>peptide 2 (52 aa)
MTLCQISSMSSNFVGYHTCLNIITIRQPKVLLWCNITKKCSAKSSNVGRTNG*

>peptide 3 (34 aa)
MARPRATSVRTNSGLRFSRLAQYNISSVMIPCLA*

>peptide 4 (31 aa)
MAVTGSRDRANWSSHLNSNLALLRASSQACA*

Sequence

>CNT30677735
ACGTAGATCTCCCCTCCAGCTTCACCATGCTGTTCCCCACTGATTGTTTTCCTTGCAGCCAAAAATTCAGCACTCATAGCATTCATTCCTTCCTTCACAG
CTTCCTCTACTGTTCCGTAACCATGTTCATCTGCATATTTTCTAATATCCTCTGTGATTTTCATCGAACAAAACTTGGGCCCACACATTGAGCAGAAATG
CGCTACTTTGGCACCCTCAGATGGCAATGTTTCATCATGGAAAGCCATGGCGGTTACTGGATCCAGAGATAGAGCAAATTGGTCGAGCCATCTAAACTCA
AACCTTGCCTTGCTAAGGGCATCATCCCAAGCTTGTGCGTAGGGATGACCCTTTGCCAAATCAGCAGCATGAGCAGCAATTTTGTAGGATATCACACCTG
TCTTAACATCATCACGATTAGGCAACCCAAGGTGCTCCTTTGGTGTAACATAACAAAGAAGTGCAGTGCCAAGAGCTCCAATGTTGGCCGCACCAATGGC
TGAGGTGATGTGGTCATAACCAGGTGCCTCTTGTTGGAAGGAATTATGGCCCGTCCACGGGCAACTTCTGTCCGAACAAATTCAGGACTAAGGTTCTCGC
GCTTGGCACAGTATAACATCTCCTCTGTTATGATTCCATGTTTAGCATAATACATTTGTGTGTAACGAGGACTACCCATCTTCTCCCTCCTATCAATCCA
TTCCTTCCTTATCTTTGGGAGT