« Back to Setaria viridis search


Detailed information on CNT30677703


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30505424Setaria viridisNicotiana attenuata62.8548.2896.44225forward
CNT30712870Setaria viridisGlycine max64.813.9695.69232forward
CNT3092080Setaria viridisSolanum tuberosum57.8235.5196.14207forward
CNT30184864Setaria viridisSecale cereale100.8462.3595.57361forward
CNT30438181Setaria viridisAegilops tauschii100.8440.7995.29361forward
CNT30242955Setaria viridisAvena sativa57.5422.0898.54206forward
CNT30667558Setaria viridisTriticum dicoccoides100.8431.594.74361forward
CNT30605211Setaria viridisGossypium raimondii64.817.0896.12232forward
CNT30203049Setaria viridisHelianthus annuus58.9479.9297.16211forward
CNT30364089Setaria viridisSorghum bicolor92.7473.1391.87332forward
CNT30595740Setaria viridisOryza meridionalis37.9952.9299.26136reverse complement
CNT30357348Setaria viridisLactuca sativa58.9425.3994.79211forward
CNT30574572Setaria viridisVitis vinifera64.83.4596.98232forward
CNT3056135Setaria viridisAmborella trichopoda65.0822.0490.56233reverse complement
CNT3099908Setaria viridisOryza rufipogon49.4464.698.31177forward
CNT30335929Setaria viridisCynara cardunculus28.2127.3797.03101forward
CNT30725732Setaria viridisLupinus angustifolius64.851.4495.26232forward

Expression of CNT30677703

Peptides detected in this lncRNA

>peptide 1 (42 aa)
HALDGCPSIEKEGRFQRRKAMGRESVCDPWISDRETVSKLRG*

>peptide 2 (55 aa)
IMHWMDARALRRKDAFRGERPWGERASVIHGSPIGKPYPSSVASLRSLDFSNLAN*

Sequence

>CNT30677703
ATCATGCATTGGATGGATGCCCGAGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGAGAGAGCGTCTGTGATCCATGGATCTCCGA
TCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAAGGAAGAAAAATCAA
CCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCATCAAAAGAAATCCGAAGCGGTTTCATTCAATTTGTTGTGGATTGGATGATGG
AAAAACCAGCAAGCAGCAAGCGTAGGCTGTGTTGCTGTAGCGCGCCCTACGGAGTTGT