Detailed information on CNT30677535


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696621Setaria viridisOryza sativa55.0211.9788.7115forward
CNT30283765Setaria viridisTriticum aestivum73.6834.4584.42154forward
CNT30384857Setaria viridisTriticum turgidum69.3834.283.45145forward
CNT30435716Setaria viridisAegilops tauschii69.3818.9384.14145forward
CNT30239672Setaria viridisAvena sativa83.2523.8784.48174forward
CNT30679142Setaria viridisTriticum urartu69.8614.3185.62146forward
CNT30596940Setaria viridisOryza meridionalis60.2929.7289.68126forward
CNT30149646Setaria viridisBrachypodium distachyon68.926.8284.03144forward
CNT30103572Setaria viridisOryza rufipogon55.0210.888.7115forward
CNT30577940Setaria viridisOryza barthii55.0214.288.7115forward

Expression of CNT30677535

Peptides detected in this lncRNA

>peptide 1 (30 aa)
HYWKVFRMVDRWQVFHMVHSWQAFHMVDHW*

>peptide 2 (30 aa)
MAGLPYGGSMAGLPYGGSLAGLPYSVNSLLS

>peptide 3 (61 aa)
ITGRSSVWWIVGKFSIWCIVGRPSIWWIIGKSSEWWINGGPSIWWINGRPSIWWIIGRPSI*

>peptide 4 (29 aa)
MVDQWRAFHMVDQWQAFHMVDHWQAFHIV*

Sequence

>CNT30677535
ACATTACTGGAAGGTCTTCCGTATGGTGGATCGTTGGCAAGTTTTCCATATGGTGCATAGTTGGCAGGCCTTCCATATGGTGGATCATTGGTAAGTCTTC
CGAATGGTGGATCAATGGCGGGCCTTCCATATGGTGGATCAATGGCAGGCCTTCCATATGGTGGATCATTGGCAGGCCTTCCATATAGTGTGAATTCTCT
GCTATCAAC