Detailed information on CNT30676635


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F9I1|CLPC1_ORYSJ, E-value = 1e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Setaria viridisOryza sativa83.3332.2287.59290forward
CNT30487971Setaria viridisOlea europaea67.8245.3880.51236forward
CNT30287617Setaria viridisTriticum aestivum82.7650.6288.89288forward
CNT30561426Setaria viridisActinidia chinensis30.1714.2389.52105forward
CNT30254596Setaria viridisAvena sativa81.3221.3485.16283forward
CNT30658759Setaria viridisTriticum dicoccoides82.7648.6588.89288forward
CNT30717839Setaria viridisMalus domestica golden40.2327.5682.86140forward
CNT30150411Setaria viridisBrachypodium distachyon83.3357.4387.24290forward
CNT30101573Setaria viridisOryza rufipogon86.4935.5487.71301forward
CNT30498115Setaria viridisDigitaria exilis83.0536.4487.2289forward
CNT30558331Setaria viridisPanicum hallii82.7634.7897.57288forward

Expression of CNT30676635

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSFALSRLNTSFSIISAISFTSNFVSCRNTIISSNLFRNSGRK

Sequence

>CNT30676635
TGAGATGTGAAAAGGCCAGATTCCAAACCGAGGATTTCAGCCTCCCCTAGACACTGAGAGCAGAGTCACCTTCTTTCACCTCACCAGCCAGCATCTTCTC
TGCCAAACTGTCTTCCAAGAGCCTCATGATAGCACGGCGCAGAGGCCTGGCACCATAGCTCGGGTTGTAACCTTCATCAACAACCCTATCGCGGAACCTC
TCAGTGACCTGGAGATCAATGTCCTTCGCCTTGAGCCGATTAAATACTTCTTTCAGCATAATATCAGCAATCTCCTTCACCTCCAACTTTGTCAGCTGCC
GGAACACAATCATCTCATCCAATCTGTTCAGGAACTCTGGCCGGAAGT