Detailed information on CNT30676593


BLAST search results

BLAST vs Swiss-Prot:
sp|Q93VR4|ML423_ARATH, E-value = 3e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524011Setaria viridisSetaria italica45.9370.56100254forward
CNT30290212Setaria viridisTriticum aestivum18.4444.9393.14102forward
CNT30244584Setaria viridisAvena sativa18.4428.192.16102forward
CNT30366141Setaria viridisSorghum bicolor36.5329.1588.61202forward
CNT30151725Setaria viridisBrachypodium distachyon18.4435.7989.22102forward
CNT30576141Setaria viridisOryza barthii15.3726.3292.9485forward

Expression of CNT30676593

Peptides detected in this lncRNA

>peptide 1 (32 aa)
TAETRTRPPITTKPTRTRTPPPPPTTTCTSAC*

>peptide 2 (29 aa)
NRGNKDTTTHNYQTNTDSDTTATTNDDMH*

>peptide 3 (40 aa)
MTSGSGTCSLALSNSMDQLTTAPASPSLAGDTLSVILKFL*

Sequence

>CNT30676593
CAACCGCGGAAACAAGGACACGACCACCCATAACTACCAAACCAACACGGACTCGGACACCACCGCCACCACCAACGACGACATGCACTAGCGCGTGCTA
AACGACTGCGATTTCCGCCTCGGCGGACGGAACGATTTCCGCCTGGTTCTTGAGTAGGTAGTCGTCGAGGTCGTGGAACGTCTTGGTGGCGGTCTCCTTG
ATGACGTCCGGGTCGGGCACCTGCTCGCTGGCCTTGTCGAACTCCATGGACCAGTTGACGACGGCGCCGGCCTCGCCCTCCTTGGCCGGGGACACCTTGA
GCGTGATCTTGAAGTTCTTGTAGAAGTTGACCAGCTCGCCCTCCACCTTCTCCTTGGCGAACGTCAGCTGCTGGGGGAAGATCTTTGGGAACAGCTCCGT
CGAGTCGCGCAGCGCCGCCCACAGCTTCTCCGCCGGGGACTTCACCTCCACCACCAGCTCGGCCTTGGAACCCATCCTAGCTTGCAGCTGAGCTCTACCA
CCTCCTATGCTACGAACTGTGCAGGTGAGTGCTGTGCTCGTGATCTGGCGATG