Detailed information on CNT30676378


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XT99|AKR2_ORYSJ, E-value = 8e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692870Setaria viridisOryza sativa35.6321.485.71119forward
CNT30192307Setaria viridisSecale cereale72.7529.6384.36243forward
CNT30472864Setaria viridisSaccharum spontaneum72.7541.0583.13243forward
CNT30133477Setaria viridisLolium perenne34.7357.4392.24116forward
CNT30101518Setaria viridisOryza rufipogon28.4439.2685.2695forward
CNT30603989Setaria viridisOryza punctata27.5442.290.2292forward

Expression of CNT30676378

Peptides detected in this lncRNA

>peptide 1 (48 aa)
CRYSNAHSSRYCIELFRFPRRQWRGLRILPGAGHLRISITRDFTCSSV*

>peptide 2 (35 aa)
LADTATHIVQGIVLSYSDFQDDNGGVSESFQVLAI*

>peptide 3 (47 aa)
MAGSPNPSRCWPSEDIDHPRLHLQQRMTRVPTSHLVTASQTVPPHSG*

Sequence

>CNT30676378
CTTGCAGATACAGCAACGCACATAGTTCAAGGTATTGTATTGAGCTATTCAGATTTCCAAGACGACAATGGCGGGGTCTCCGAATCCTTCCAGGTGCTGG
CCATCTGAGGATATCGATCACCCGCGACTTCACCTGCAGCAGCGTATGACTCGAGTTCCGACATCTCATCTGGTGACAGCTTCACAGACAGTGCCCCCAC
ATTCTGGTTGAAATTCTCGATTTTTGTTGTGCCTGGTATGGGGCAAACATCGTTTCCCTGATGGTGCACCCAAGCCAATGCAAGTTGTGATGGTGTCAAG
GAAGGTGACCCCAGCGGTGACGGCGTGGTGGATG