Detailed information on CNT30676186


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41870|PIP11_MAIZE, E-value = 2e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30590202Setaria viridisMusa acuminata51.2225.5584.42231forward
CNT30658930Setaria viridisTriticum dicoccoides15.0828.4592.6568forward
CNT30131632Setaria viridisLolium perenne47.8998.6393.06216forward
CNT30232947Setaria viridisAnanas comosus16.6331.659275forward
CNT30681640Setaria viridisTriticum urartu44.1216.9789.45199forward
CNT30325169Setaria viridisAsparagus officinalis39.4767.1785.96178forward

Expression of CNT30676186

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPPKDQAMPWMPTVAHLDWDLLTPMTVRMLM*

>peptide 2 (57 aa)
QQMECSTANLKRNGTTPQQHSNKDWRRPHTPIRSSLPVWTGISQHRTQQQQQLKTCS*

>peptide 3 (80 aa)
MALHDHVEDGPGQRQFPRQEQPEDHAAEGPGDALDADGGALGLGLADAHDGEDADVEEEEGGDELGDAGAVEGPGLELPGL

>peptide 4 (60 aa)
MEQLHSNTVTRIGGDHTPPSEAACLFGLASHSTGHSSSSSLRPALERDRPDDHLVVDGTA*

Sequence

>CNT30676186
CAACAGATGGAGTGCAGTACAGCAAACTTGAAGAGAAATGGAACAACTCCACAGCAACACAGTAACAAGGATTGGAGGCGACCACACACCCCCATCCGAA
GCAGCTTGCCTGTTTGGACTGGCATCTCACAGCACAGGACACAGCAGCAGCAGCAGCTTAAGACCTGCTCTTGAACGGGATCGCCCTGATGACCACCTGG
TGGTAGATGGCACTGCATGATCATGTAGAAGACGGCCCTGGTCAACGACAGTTTCCTCGCCAGGAACAGCCCGAAGATCATGCCGCCGAAGGACCAGGCG
ATGCCCTGGATGCCGACGGTGGCGCACTTGGACTGGGACTTGCTGACGCCCATGACGGTGAGGATGCTGATGTAGAGGAAGAGGAAGGTGGCGACGAACT
CGGCGATGCCGGCGCGGTAGAAGGACCAGGACTTGAGCTCCCCGGGCTCGA