« Back to Setaria viridis search


Detailed information on CNT30675786


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694623Setaria viridisOryza sativa36.4211.2784.43122forward
CNT30523595Setaria viridisSetaria italica56.7214.57100190forward
CNT30729022Setaria viridisCorchorus capsularis34.6312.7682.76116forward
CNT30709068Setaria viridisGlycine max41.4929.7687.77139forward
CNT30307182Setaria viridisTriticum aestivum32.2428.5791.67108forward
CNT30436841Setaria viridisAegilops tauschii36.4218.3581.97122forward
CNT30127990Setaria viridisCorymbia citriodora34.6324.7382.76116forward
CNT30688700Setaria viridisTriticum urartu32.2426.0991.67108forward
CNT30350258Setaria viridisEragrostis tef36.4211.3881.97122forward
CNT30581348Setaria viridisEchinochloa crusgalli36.4211.881.97122forward
CNT3064134Setaria viridisSelaginella moellendorffii41.1965.482.61138forward

Expression of CNT30675786

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVYGILQVNIEKLRFLVHLTRSRLIKHYINSYLEQADIEKAKDHTI*

>peptide 2 (32 aa)
TDNCKTKNGLWDSPSKHRKVEVPCPSNPLQTH*

Sequence

>CNT30675786
TAACAGACAATTGCAAAACCAAAAATGGTTTATGGGATTCTCCAAGTAAACATAGAAAAGTTGAGGTTCCTTGTCCATCTAACCCGCTCCAGACTCATTA
AGCATTACATAAATTCATATCTAGAACAAGCTGATATCGAAAAGGCTAAAGACCACACCATCTGAAGAGATCACTTAGGCCACCAGAGTGGGTGGGAGCT
TCTTGGTGCGCTTGTAGTAGCGGGCCAGGCGGTGGATCCTGCTCTCAACAAGAATGAGCCTGAATTTGGAGTCCTTGTCCTTCCTGTTCCTCTCCAGATG
CTTCCTAATAGCCACCGCCTTCTTAATCAGGAAGT