Detailed information on CNT30675423


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4LB21|METK4_HORVU, E-value = 9e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30212612Setaria viridisHelianthus annuus44.6462.2482150forward

Expression of CNT30675423

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MSTVWTRIGTMAPLSLWYSTVTWVFPSVAYPNMCPWSPAPISSGRLVKLPWTPCAMSGDCCSMLTSTLQ*

>peptide 2 (88 aa)
RRRLKVASISTSLQISSDFIIGHSLIMLGGDEHSVDTNRDHGPIVVVVLNSHLGLPISSISKHVPLVTSTNILRALGEVAMDTLCNVR*

Sequence

>CNT30675423
ACGCCGCCGTCTTAAGGTAGCGTCCATTTCCACCTCTCTTCAGATCAGCAGCGATTTCATCATTGGTCACAGTCTCATCATGTTGGGTGGAGATGAGCAC
AGTGTGGACACGAATAGGGACCATGGCCCCATTGTCGTTGTGGTACTCAACAGTCACCTGGGTCTTCCCATCAGTAGCATATCCAAACATGTGCCCCTGG
TCACCAGCACCAATATCCTCAGGGCGCTTGGTGAAGTTGCCATGGACACCCTGTGCAATGTCAGGTGACTGCTGCTCAATGTTGACAAGCACCTTGCAGT
GATCAGCATCGAGCCCTACATCATTGGACACAAAAC