Detailed information on CNT30675350


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 8e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316236Setaria viridisCorylus avellana73.0833.1284.87152forward
CNT30547527Setaria viridisIpomoea triloba38.9418.7190.1281forward
CNT30372986Setaria viridisArabidopsis thaliana70.6714.3882.31147forward
CNT3019597Setaria viridisCitrullus lanatus72.1220.0586150forward
CNT3045373Setaria viridisPrunus dulcis72.619.2684.11151forward
CNT3085191Setaria viridisVigna radiata72.621.0686.09151forward
CNT30143941Setaria viridisMedicago truncatula69.7132.3785.52145forward
CNT30313706Setaria viridisCamelina sativa72.1246.0182150forward
CNT3059659Setaria viridisArabidopsis lyrata72.1234.5684150forward
CNT30612508Setaria viridisArabis alpina73.085.9983.55152forward
CNT3015270Setaria viridisZea mays72.1233.1196150forward
CNT30203835Setaria viridisHelianthus annuus37.516.2585.978forward
CNT30596064Setaria viridisOryza meridionalis63.4625.7891.67132forward
CNT30100260Setaria viridisOryza rufipogon88.9425.7789.73185forward
CNT3050899Setaria viridisCucumis sativus72.1259.5284.67150forward

Expression of CNT30675350

Peptides detected in this lncRNA

>peptide 1 (48 aa)
QQHKPPKFRACPQTQKEGPSCPSGQTHTEGTPGQRLQPSVGWRTQRTR*

>peptide 2 (68 aa)
NSSTNHQNLELVLKLRKRAHHVPVVKHTLRERLARGCSPQLAGEPKGLDDREVSLDVVERGTRPLHLLK

Sequence

>CNT30675350
AACAGCAGCACAAACCACCAAAATTTAGAGCTTGTCCTCAAACTCAGAAAGAGGGCCCATCATGTCCCAGTGGTCAAACACACACTGAGGGAACGCCTGG
CCAGAGGTTGCAGCCCTCAGTTGGCTGGAGAACCCAAAGGACTCGATGACAGGGAGGTAAGCCTTGATGTTGTAGAGCGGGGTACCAGGCCTCTGCATCT
CCTCAAAC