Detailed information on CNT30675321


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43216|H2B5_WHEAT, E-value = 2e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3094085Setaria viridisSolanum tuberosum24.4713.6692.7569forward
CNT30660671Setaria viridisTriticum dicoccoides69.8635.4394.42197forward
CNT303693Setaria viridisZea mays75.1861.4594.34212forward
CNT30681751Setaria viridisTriticum urartu82.273795.26232forward
CNT30369782Setaria viridisOryza glumipatula77.6634.3894.52219forward
CNT30724478Setaria viridisLupinus angustifolius25.5311.9490.2872forward

Expression of CNT30675321

Peptides detected in this lncRNA

>peptide 1 (54 aa)
NLVTALVPSETACLASSPGRTSFSKMSLMNEFMMDMALEEIPMSGCTCLSTLKM*

>peptide 2 (92 aa)
LGDSLGALRDGVLGELAGEDELLEDVVDERVHDGHGLGGDTNVRVHLLEHLEDVDLVGLDALLGLLLPLLLAALLAGARHALLGLGLLVGLLL

Sequence

>CNT30675321
AACTTGGTGACAGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGCTTCTCGAAGATGTCGTTGATGAACGAGTTCATGA
TGGACATGGCCTTGGAGGAGATACCAATGTCCGGGTGCACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTAGGTCTCGACGCTCTTCTTGGCCTTCTT
CTTCCCCTTCTTCTCGCCGCCCTCCTTGCCGGAGCCAGGCACGCGCTTCTCGGCCTTGGGCTTCTTGTCGGCCTTCTCCTCC