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Detailed information on CNT30674978


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640184Setaria viridisNymphaea colorata24.0623.6582.68179forward
CNT30512774Setaria viridisJuglans regia29.317.4783.03218forward
CNT30373037Setaria viridisArabidopsis thaliana33.3312.1784.27248forward
CNT3019595Setaria viridisCitrullus lanatus28.938.7485.58215forward
CNT30728649Setaria viridisCorchorus capsularis31.8521.7684.81237forward
CNT30405829Setaria viridisBeta vulgaris34.1430.7583.07254forward
CNT30636551Setaria viridisCapsicum annuum22.9825.9187.13171forward
CNT30510528Setaria viridisSolanum lycopersicum33.8719.5786.11252forward
CNT30665536Setaria viridisTriticum dicoccoides33.8738.2488.49252forward
CNT30263812Setaria viridisBrassica rapa23.1225.2984.3172forward
CNT30612239Setaria viridisArabis alpina33.339.4486.29248forward
CNT30448454Setaria viridisSaccharum spontaneum34.0113.7296.05253forward
CNT3015244Setaria viridisZea mays27.0272.396.02201forward
CNT30716232Setaria viridisMalus domestica golden32.9318.4882.04245forward
CNT30479087Setaria viridisArabidopsis halleri25.9466.3288.08193forward
CNT30361875Setaria viridisSorghum bicolor34.0122.9494.47253forward
CNT30154011Setaria viridisPrunus persica13.3135.2387.8899forward
CNT30705326Setaria viridisPrunus avium33.8719.6185.32252forward
CNT3024028Setaria viridisPopulus trichocarpa20.9721.1183.97156forward
CNT30119815Setaria viridisCitrus clementina17.0727.6782.68127forward
CNT30332479Setaria viridisDioscorea rotundata13.7136.0487.25102forward
CNT30575986Setaria viridisOryza barthii38.8424.4786.85289forward
CNT30557952Setaria viridisPanicum hallii27.9625.5295.19208forward

Expression of CNT30674978

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MGTSSTNHQNLELVLELRKRGHLLLETLPLADIQHQLSSLGASLQRIRAHHVPVVKHTLRERLARGKP*

>peptide 2 (59 aa)
MILTFIPVATFPEKTRPKAKNLPLSDAGIILETYSIRGPSGSQFLIAEGGISSSQAVQY*

Sequence

>CNT30674978
ATGTAGTTCCCGTTACAGTAGACGAATTGGCCATTAAACCAGCATGGGTACCAGCAGCACAAACCACCAAAATTTAGAGCTTGTCCTCGAACTCAGAAAG
AGGGGTCATCTGCTCCTTGAGACCCTTCCTCTTGCGGATATCCAACACCAGCTGAGCAGCCTGGGAGCCAGCCTCCAGAGGATCAGAGCCCATCATGTCC
CAGTGGTCAAACACACACTGAGGGAACGCCTGGCCAGAGGTAAGCCTTGATGTTGTAGAGCGGGGTACCAGGCCTCTGCATCTCCTCAAACACGTGCCCT
CTCTTCTGGTTCAGAACACCATAGATACCACCAAGTGCATTTTCTGGGGCCTGGATCTCCACAAGGAACATCCTCAACAGACTCTTGTTTCTTTCCCATC
CAGATAACAGTACGCTGGACACTCTTGACGTACAGATCCTTCTTCTGGCCAGGGACATAGTTGGGACCCATGATCCTAACCTTCATACCAGTAGCAACCT
TCCCAGAGAAGACACGACCAAAGGCGAAGAACCTGCCCTTGTCAGATGCTGGAATCATCTTAGAAACATACAGCATAAGAGGACCCTCCGGATCACAGTT
CCTGATAGCAGAAGGTGGAATATCATCATCTCAAGCAGTGCAGTACTAGCTGGAAGCCAAGTTTGCATAACACGCTTCATCAAAGCCTTGCCAACCAATT
CCTTCTCATCAGACTTCATGGTAACATTAAGCTTTTGAAGCATG