Detailed information on CNT30674280


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z974|FTSH1_ORYSJ, E-value = 2e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30368444Setaria viridisSorghum bicolor42.7416.7889.32103forward
CNT30102047Setaria viridisOryza rufipogon52.725.691.34127forward
CNT30576812Setaria viridisOryza barthii25.7313.7888.7162forward

Expression of CNT30674280

Peptides detected in this lncRNA

>peptide 1 (31 aa)
QKRIDQYNTPRPAICLLLCCLKQQKARPGRR*

>peptide 2 (79 aa)
TKAHRSIQHAKASYLPAALLPQATKSSAWPSMNRLMNSSPSTVSFSIRSCASLWRMSMCVVMIWVLLAIFSKSTSLANAF

Sequence

>CNT30674280
ACAAAAGCGCATAGATCAATACAACACGCCAAGGCCAGCTATCTGCCTGCTGCTTTGCTGCCTCAAGCAACAAAAAGCTCGGCCTGGCCGTCGATGAACA
GGCTCATGAACTCCTCCCCATCCACCGTCTCCTTCTCGATCAGAAGCTGTGCGAGCTTGTGGAGGATGTCGATGTGCGTCGTGATGATCTGGGTTCTTCT
AGCAATTTTCTCAAAGTCAACATCTTTAGCCAATGCTTTTC