Detailed information on CNT30674243


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694392Setaria viridisOryza sativa20.262.386.0293forward

Expression of CNT30674243

Peptides detected in this lncRNA

>peptide 1 (61 aa)
QRHPHASPVKKNEKGRHSFFPFPIVNYRKTKRVKAQRFHGEGCRRPSNIRAQPREDPHLNH*

>peptide 2 (47 aa)
MFCPSGDLETAVLLNCSGYAPLHEDALDLDIELLTPSEGATMLSILG*

>peptide 3 (53 aa)
MSCCWNGCAEVLLQASLVTACSVHRVIWKQQCCSIALGMLHSMKTLLTLTLSC*

>peptide 4 (40 aa)
TAASTCFSCKKKRKGTPLFFSFPYRKLQKDQKGKSSEISR*

Sequence

>CNT30674243
ACAGCGGCATCCACATGCTTCTCCTGTAAAAAAAAACGAAAAGGGACGCCACTCTTTTTTTCCTTTCCCTATCGTAAATTACAGAAAGACCAAAAGGGTA
AAAGCTCAGAGATTTCACGGTGAAGGATGTCGCCGCCCGTCAAATATCAGAGCTCAACCTCGTGAAGATCCTCACCTAAACCATTGAACTGAAGCGATGA
GTTGCTGCTGGAACGGCTGTGCGGAGGTCTTACTCCAGGCATCATTGGTGACCGCATGTTCTGTCCATCGGGTGATCTGGAAACAGCAGTGCTGCTCAAT
TGCTCTGGGTATGCTCCACTCCATGAAGACGCTCTTGACCTTGACATTGAGCTGTTGACGCCGTCTGAGGGTGCCACGATGTTATCCATACTAGGGTGAA
TAGACATCTCTTTCATTTGCAGCGCCCTGTGTCAGCGGCGGCATCGGTGCAGATTGTGT