CANTATAdb - search

Detailed information on CNT30674125

BLAST search results

BLAST vs Swiss-Prot:
sp|P29195|CAPP1_SORBI, E-value = 4e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30474298	Setaria viridis	Saccharum spontaneum	48.24	37.21	88.89	288	forward
CNT30497176	Setaria viridis	Digitaria exilis	48.07	28.56	90.59	287	forward
CNT30557292	Setaria viridis	Panicum hallii	48.07	36.79	86.76	287	forward

Expression of CNT30674125

Peptides detected in this lncRNA

>peptide 1 (43 aa)
HLIFTSSLIRKENMNESQGVNHKETHPHAGAFTALCSERSRAP*

>peptide 2 (35 aa)
MSSFTMESPNVETCRMKSSRLPSAMVLSPQSHRDL*

>peptide 3 (59 aa)
MPAAMPFMVRMSVSSSPGPYSLAGLSFTIPRGWFSSANSLDSGGCGVTLKFGSLILFRV*

>peptide 4 (29 aa)
MLVPLQHSAASEAEHPSQCSACRRRCPSW*

Sequence

>CNT30674125
TCCACTTGATCTTTACATCAAGCCTTATTCGAAAAGAAAACATGAACGAAAGCCAAGGTGTGAATCATAAAGAAACACATCCACATGCTGGTGCCTTTAC
AGCACTCTGCAGCGAGCGAAGCAGAGCACCCTAGCCAGTGTTCTGCATGCCGGCGGCGATGCCCTTCATGGTGAGGATGAGCGTGTCCTCCAGCCCCGGC
CCGTACTCGCTCGCCGGGTTGAGCTTCACAATCCCGCGCGGCTGGTTCTCGTCGGCGAACTCCTTGGACAGCGGCGGCTGCGGCGTCACCTTGAAGTTCG
GGTCCCTTATCCTCTTCAGGGTGTAGGCCTGCCACACGTTAAGAATGGTGATGTAGGGGTCGCGCAGCCGCAGCTGCTGCTTCAGGCCGGGATCGCTTTC
AAGGATTTCCTTGTGCGTGGTGATCGCGTCGATCACGTCTGTGTGACGCTCCGACTCCTGACGGATGTCCAGCTTCACCATGGAGAGCCCGAACGTCGAG
ACCTGCCGCATGAAGTCGAGCAGGCTCCCGTCGGCGATGGTCTTGTCACCACAGTCACACAGGGATTTGTAGCACAGCTCAAGGGGCTCCAGGAACT