Detailed information on CNT30673967


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521394Setaria viridisSetaria italica81.4712.3100444forward
CNT30193220Setaria viridisSecale cereale46.9728.8990.62256forward
CNT30140847Setaria viridisLolium perenne45.6943.6886.75249forward
CNT30368707Setaria viridisSorghum bicolor42.3929.6590.91231forward
CNT30369646Setaria viridisOryza glumipatula46.9748.1280.08256forward
CNT30115905Setaria viridisOryza nivara46.9747.8580.47256forward

Expression of CNT30673967

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLVPLQHSAASEAEHPSQCSACRRRCPSW*

>peptide 2 (59 aa)
MPAAMPFMVRMSVSSSPGPYSLAGLSFTIPRGWFSSANSLDSGGCGVTLKFGSLILFRV*

>peptide 3 (30 aa)
MNESQGVNHKETHPHAGAFTALCSERSRAP*

Sequence

>CNT30673967
TTGGAATAAATATCTTTATTAAATATAACATGCCAATAGTTTGTGGTCTTTATATTATTACAGAATTACAGAATGCTTAAACAGCCAAGAAGTTCCACTT
GATCTTTACATCAAGCCTTATTCGAAAAGAAAACATGAACGAAAGCCAAGGTGTGAATCATAAAGAAACACATCCACATGCTGGTGCCTTTACAGCACTC
TGCAGCGAGCGAAGCAGAGCACCCTAGCCAGTGTTCTGCATGCCGGCGGCGATGCCCTTCATGGTGAGGATGAGCGTGTCCTCCAGCCCCGGCCCGTACT
CGCTCGCCGGGTTGAGCTTCACAATCCCGCGCGGCTGGTTCTCGTCGGCGAACTCCTTGGACAGCGGCGGCTGCGGCGTCACCTTGAAGTTCGGGTCCCT
TATCCTCTTCAGGGTGTAGGCCTGCCACACGTTAAGAATGGTGATGTAGGGGTCGCGCAGCCGCAGCTGCTGCTTCAGGCCGAGTCCTCCGGAATGTCAG
AAAATCCACTAGTTAGCAGATGGCGCGAGCGTTCGCGTGTGCTGT