Detailed information on CNT30673857


BLAST search results

BLAST vs Swiss-Prot:
sp|P00291|PLAS_SAMNI, E-value = 5e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30391539Setaria viridisTriticum turgidum15.5738.9790.57106forward
CNT30443574Setaria viridisAegilops tauschii32.4540.3386.88221forward
CNT30141888Setaria viridisLolium perenne32.4541.6286.88221forward
CNT3010819Setaria viridisZea mays20.4137.2792.81139forward
CNT30368525Setaria viridisSorghum bicolor31.1335.9395.28212forward
CNT30370409Setaria viridisOryza glumipatula32.1628.1187.67219forward
CNT30148503Setaria viridisBrachypodium distachyon20.5644.7385.71140forward
CNT30102318Setaria viridisOryza rufipogon32.1635.3287.67219forward
CNT30583031Setaria viridisEchinochloa crusgalli32.3125.495.45220forward
CNT30116921Setaria viridisOryza nivara32.1632.7887.67219forward
CNT30557529Setaria viridisPanicum hallii24.2378.9595.15165forward

Expression of CNT30673857

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MDCLVDGDLADHPCSLVRLAVEAVGSRHGEGDGVGLPRRVEVLLLRDLGGVHPAGHLVLVEDHVVRVAGVVLEGDGGW*

>peptide 2 (32 aa)
MRQPQRVAREPSLSHRMAERACPWISLPSLPPR

>peptide 3 (30 aa)
MVGGDYGGARERSSSKQALARRRQLERREK*

>peptide 4 (56 aa)
MVDACMRFSTWQQQMPRDDGSRMEENHIGDGKLGSSSRFSWYSSTVSWMMNEQWIA*

>peptide 5 (33 aa)
MAAANAKRRWIEDGGESYWRWQARLKLSLLMVQ*

Sequence

>CNT30673857
CACAGCACAAACATATGCATACCCATATGAGAAATACAAATTTAATTCGCTAAAGAAAAGGAGTAAGGATGAAGTAGAAAGAAGATGATGATATATGGTG
GACGCATGCATGCGATTTAGTACATGGCAGCAGCAAATGCCAAGAGACGATGGATCGAGGATGGAGGAGAATCATATTGGAGATGGCAAGCTAGGCTCAA
GCTCTCGCTTCTCATGGTACAGTAGTACAGTATCCTGGATGATGAACGAACAATGGATTGCTTAGTTGACGGTGACCTTGCCGACCATCCCTGCTCCTTG
GTGCGGCTCGCAGTAGAAGCTGTAGGTTCCCGGCACGGTGAGGGTGACGGAGTAGGTCTCCCCCGGCGCGTTGAGGTACTCCTCCTGCGAGATCTTGGCG
GCGTCCACCCCGCTGGGCACCTCGTCCTCGTCGAAGACCACGTTGTGCGGGTAGCCGGCGTTGTTCTTGAAGGTGATGGTGGGTGGTGATTATGGAGGAG
CAAGAGAGAGGTCGAGCAGCAAGCAAGCTTTAGCCAGGCGCAGGCAGCTGGAGAGGAGGGAGAAATAGCATAGGAGGAGGATGAGGCAGCCGCAACGGGT
GGCCAGGGAGCCATCCTTATCCCATCGAATGGCTGAGCGTGCATGCCCATGGATTTCCCTTCCCTCGCTCCCTCCTCGTCC