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Detailed information on CNT30673796


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513024Setaria viridisJuglans regia48.914.985.59111forward
CNT30371693Setaria viridisArabidopsis thaliana49.7820.8184.96113forward
CNT30306600Setaria viridisTriticum aestivum44.9332.1896.08102forward
CNT30384863Setaria viridisTriticum turgidum50.2211.291.23114reverse complement
CNT3085000Setaria viridisVigna radiata55.074.4591.2125forward
CNT30554195Setaria viridisOryza glaberrima1007.4594.71227forward
CNT30254428Setaria viridisAvena sativa10042.2792.07227forward
CNT30669382Setaria viridisTriticum dicoccoides58.5922.3296.24133forward
CNT3060118Setaria viridisArabidopsis lyrata49.7838.4487.61113forward
CNT30141866Setaria viridisLolium perenne10037.3492.07227forward
CNT30347540Setaria viridisEragrostis tef109.2520.9688.71248forward
CNT30368840Setaria viridisSorghum bicolor49.3431.2100112forward
CNT30370517Setaria viridisOryza glumipatula52.8624.0597.5120forward
CNT30571602Setaria viridisVitis vinifera81.0616.6889.13184forward
CNT30705067Setaria viridisPrunus avium55.0712.8284.8125forward
CNT30116955Setaria viridisOryza nivara10028.7794.71227forward
CNT30111719Setaria viridisFicus carica46.711.7387.74106forward

Expression of CNT30673796

Peptides detected in this lncRNA

>peptide 1 (74 aa)
HLLEVPGGERGVERLDDGLHGLADDLHLGLRVEAGGEAEVVHVLGALADGVLGVDAGAVHVALLDRLLHLELLLL

>peptide 2 (39 aa)
IFWRFPVASAESSDLTMDCMDLPMTCILACVSRREARRR*

Sequence

>CNT30673796
ACATCTTCTGGAGGTTCCCGGTGGCGAGCGCGGAGTCGAGCGACTTGACGATGGACTGCATGGACTTGCCGATGACCTGCATCTTGGCCTGCGTGTCGAG
GCGGGAGGCGAGGCGGAGGTAGTTCATGTGCTCGGTGCGCTTGCGGATGGCGTTCTCGGCGTAGATGCGGGCGCCGTCCATGTTGCCCTTCTCGATCGCC
TTCTTCACCTTGAGCTTCTGCTCCTTC