CANTATAdb - search

Detailed information on CNT3067374

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30101114	Leersia perrieri	Oryza rufipogon	30.27	2.48	81.15	191	forward

Expression of CNT3067374

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MQEEQGNEGILKNILSSFRDITDVSILFKFWREAYKYIGTVIPFLTELKGANRF*

>peptide 2 (39 aa)
MCICSLIYLDYRYITEELVIILCHLWTKIHLDVIKYEYGF

>peptide 3 (38 aa)
MIYSLRCKLNDISMPSCLVTACVFAPLSILTIGTSPKN*

>peptide 4 (35 aa)
MPIWLLCSFNAEYLSRDSSILQSIRIILHSGTAKC*

Sequence

>CNT3067374
AGCTAAAATGGTGCCCTTCAGCTGAGCATTTCATCTGCTGAAGCGTCTTGTATACAGGAGACCAGGACAGGCTTGATATATCAAATATGCAGGGAGGATG
AGGAATTCAAGCGTGACAGCTGGTCTTCAGCTAGGCATCAGGTATAGTAATTTGAATGCAAGAAGAACAAGGAAATGAAGGGATCTTGAAGAACATCTTG
TCGTCTTTCAGAGATATTACTGATGTAAGTATTTTGTTTAAATTTTGGCGAGAGGCATATAAATATATAGGTACTGTAATTCCCTTTCTGACTGAGTTAA
AAGGTGCAAATAGATTCTAATATATATGCCGATTTGGTTGTTGTGTTCATTCAATGCGGAGTATCTAAGTAGGGATAGTTCAATACTTCAATCCATTCGA
ATCATTTTGCATAGTGGAACCGCTAAGTGCTGAAATATACTCCATAAATGATATACAGTTTGCGATGTAAATTAAACGACATTTCCATGCCGAGCTGCTT
AGTCACAGCATGTGTATTTGCTCCCTTATCTATCTTGACTATAGGTACATCACCGAAGAACTAGTGATTATTTTGTGCCATTTATGGACCAAGATACATT
TAGATGTTATCAAATATGAATATGGTTTCTA