Detailed information on CNT30673569


BLAST search results

BLAST vs Swiss-Prot:
sp|P15804|CAPP3_SORBI, E-value = 2e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374052Setaria viridisArabidopsis thaliana22.5425.1885.9271forward
CNT30350530Setaria viridisEragrostis tef64.1319.3587.62202forward
CNT30583511Setaria viridisEchinochloa crusgalli74.2926.5692.31234forward
CNT30557319Setaria viridisPanicum hallii61.917.2792.31195forward

Expression of CNT30673569

Peptides detected in this lncRNA

>peptide 1 (32 aa)
YLQDKLLCFHVVVPELLPEWLEFAGDGGVSLG*

>peptide 2 (78 aa)
MVGSPLAKTISSRSRVTLKNGHSLYISLSIWKFLISFFMACLNAAPNPSHTGRWNLVCVHEKIHGIARSDSMPPFGFLF

Sequence

>CNT30673569
TACCTGCAGGATAAGCTTCTCTGTTTCCACGTAGTTGTTCCTGAGCTGCTCCCCGAATGGCTTGAGTTCGCCGGCGATGGTGGGGTCTCCCTTGGCTAAG
ACCATCTCGAGCAGGTCCAGGGTGACCCTGAAGAATGGCCACTCGTTGTACATCTCCTTGAGCATCTGGAAGTTCTTGATATCCTTCTTCATGGCGTGCT
TGAACGCGGCGCCGAACCCGAGCCACACCGGGAGGTGGAACCTCGTCTGCGTCCACGAGAAGATCCACGGGATCGCGCGGAGCGACTCGATGCCGCCCTT
CGGCTTCCTCTTCGC