Detailed information on CNT3067339


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005579, E-value = 3e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696895Leersia perrieriOryza sativa8.8726.6888.79107forward
CNT30555490Leersia perrieriOryza glaberrima23.2258.3388.21280forward
CNT30597075Leersia perrieriOryza meridionalis13.625.8391.46164forward
CNT30371235Leersia perrieriOryza glumipatula23.5534.1386.27284forward
CNT30110783Leersia perrieriOryza longistaminata25.8748.7589.1312forward
CNT30102895Leersia perrieriOryza rufipogon9.2922.0984.82112forward
CNT30578158Leersia perrieriOryza barthii23.2228.488.21280forward
CNT30115552Leersia perrieriOryza nivara9.2924.1986.61112forward

Expression of CNT3067339

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLIACDQSIFNRCYMLAYFLFKFSCHVCPIAWWSSVF*

>peptide 2 (34 aa)
MLLSPLWHYSMFSFLAAPAVYYVVGRAKCDVNKR*

>peptide 3 (45 aa)
RGGDDGVQERRRPQRKDGGGARQAAGGGPENGSGCEVIAAVRRRW*

>peptide 4 (37 aa)
GGEGMMEYKSGDARSARTEAALDKRQAAAPRTAAAAR*

>peptide 5 (32 aa)
MHWFRAPRCSRITGRALSTYISDYYMRIVAIY*

>peptide 6 (57 aa)
MILNLNLDFRFFWCCKCFQVFVEPNQGVLECCVILDFGQVGSLVLLQFFVTCCGTIV*

Sequence

>CNT3067339
GGCGGGGAGGGGATGATGGAGTACAAGAGCGGCGACGCCCGCAGCGCAAGGACGGAGGCGGCGCTCGACAAGCGGCAGGCGGCGGCCCCGAGAACGGCAG
CGGCTGCGAGGTGATAGCGGCGGTGCGGCGACGATGGTGAAGGCTCCAGCTGCATCATGCACTGGTTTCGAGCACCGAGGTGTTCAAGGATTACAGGTAG
AGCATTAAGTACCTATATTTCAGACTACTATATGCGTATAGTTGCCATCTATTAACTTTGTGGCCTTTTGTGTATATATATATGCTACTGTCACCGCTAT
GGCATTACTCAATGTTTTCGTTCCTTGCAGCGCCTGCTGTATACTATGTAGTTGGCCGTGCAAAATGCGATGTTAACAAAAGATAGTCTGAAAAAAAAAA
CTAGCATGGTAAAGAAATTTTTGCCTTTTGCAAGGAATAGGAAACTGTAAGAAATCTGTTTTTTTAAGTATGAGTTGGCTGAATATATTTAGAGCCTCAT
ATGGCTTATGACTCTGGTTCTAGCACTCATGTTGAAAGAGAACTCTCCCACATGATTTAGTTAATTCCTACTATATGTGCAAAATTGGCCTGGCTATTTA
TACACTCTTCTACTTTTGTTAATATATGGCCTTAAATACACTAGATGCTAATAGCTTGTGATCAATCTATATTTAATCGCTGTTATATGCTTGCTTATTT
CCTTTTTAAATTTTCATGTCATGTTTGCCCCATAGCTTGGTGGAGCTCTGTCTTTTAGCATTTTCATAAGTAGGAGGCTGACATGTGCAAGTGATCATAT
AGGTGCTATATTAGCTATTGTAAGTCTGCTCTCTAATGGTGCTATATTAACTTGAATATTTAGACTGCTCCATGATTCTGAACCTGAACCTGGACTTTCG
ATTTTTTTGGTGCTGCAAGTGTTTTCAGGTGTTTGTTGAACCAAATCAGGGTGTGCTTGAATGTTGTGTGATTCTTGACTTTGGACAAGTTGGTAGCTTG
GTTCTGCTACAATTTTTTGTTACTTGCTGTGGAACTATTGTTTGATTCTGTAAGCAGAGCATGTGAGACTGAATCTGTAATTAGGTTGAATCTGAGATGA
ACTTTGAATTCTATTGTATTCTCTGATTGTATCTGTTATTAGTTGAATCTAAGATGGTATCTGTTACTAGGTTTGAATCTGGATTGAATTTGGTGGGCTC
AAATTT