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Detailed information on CNT30673198


BLAST search results

BLAST vs Swiss-Prot:
sp|O65101|PSAH_MAIZE, E-value = 2e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693639Setaria viridisOryza sativa49.5611.895.58113forward
CNT30532753Setaria viridisEucalyptus grandis45.1841.5383.5103forward
CNT30178026Setaria viridisSecale cereale47.3719.3589.81108forward
CNT30285918Setaria viridisTriticum aestivum47.3722.9888.89108forward
CNT30384456Setaria viridisTriticum turgidum47.3720.1988.89108forward
CNT30591852Setaria viridisMusa acuminata45.6124.9489.42104forward
CNT30435366Setaria viridisAegilops tauschii47.3723.7489.81108forward
CNT30241486Setaria viridisAvena sativa47.3729.1991.67108forward
CNT30655703Setaria viridisTriticum dicoccoides47.3730.0889.81108forward
CNT30131217Setaria viridisLolium perenne47.3721.6493.52108forward
CNT3011150Setaria viridisZea mays50.8813.7197.41116forward
CNT30679604Setaria viridisTriticum urartu47.3732.1489.81108forward
CNT30370255Setaria viridisOryza glumipatula49.5617.7495.58113forward
CNT30704201Setaria viridisPrunus avium47.3741.782.41108forward
CNT30318832Setaria viridisAsparagus officinalis52.195.8386.55119forward
CNT30149479Setaria viridisBrachypodium distachyon43.4225.7188.8999forward
CNT30101773Setaria viridisOryza rufipogon49.5613.7195.58113forward
CNT30116717Setaria viridisOryza nivara49.5613.7595.58113forward
CNT30604129Setaria viridisOryza punctata52.6319.1494.17120forward

Expression of CNT30673198

Peptides detected in this lncRNA

>peptide 1 (66 aa)
EAGCRARARRSRRGPTARWCCRCRRGRSRRSCRRTWPPRPFTATGCTETAAREAMAFAEYCRGYYR*

>peptide 2 (75 aa)
LKRVVGRGRVGAVEVPLPGGVADVVEVEVDALVAVLGHHGPSRRPAARRRRRGRPWRSLSTVEVTTGSVQVRTCAN

Sequence

>CNT30673198
CTGAAGCGGGTTGTAGGGCGAGGGCGCGTCGGAGCCGTAGAGGTCCCACTGCCCGGTGGTGTTGCCGATGTCGTCGAGGTCGAAGTAGACGCTCTTGTCG
CCGTACTTGGCCACCACGGCCCTTCACGGCGACCGGCTGCACGGAGACGGCGGCGAGGGAGGCCATGGCGTTCGCTGAGTACTGTCGAGGTTACTACCGG
TAGTGTCCAAGTGCGTACGTGCGCAAAC