Detailed information on CNT30672872


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380437Setaria viridisManihot esculenta24.5916.2591.1190forward
CNT3088372Setaria viridisVigna radiata21.5817.5284.8179forward

Expression of CNT30672872

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MDGPCSLQQRLPPGSSCSPYMKLCSQGLEDIC

>peptide 2 (57 aa)
MLASSLGTPIVEAAPIQSNRSVQSILEGLVLGDALVEWMAHVVYSKGCHLDHHVHHI*

Sequence

>CNT30672872
AGTTGACTAGTCACTAGTGACAAGATTGGTGCCTGGTAAGAAATGGCCATTTAGGGGTAAAGGATAAAGAATGAATTGTGCAGAGAACCAATAAGGAAGA
GAAAACTCTAGTCGTGCTTTTTCTCCAGGTTTGCAACTGCCTGTTTCTGACGCTTCTCCCATGCTGGCATCTTCCCTGGGAACGCCCATCGTAGAAGCCG
CTCCCATCCAAAGCAACCGCTCCGTACAAAGCATACTTGAAGGGCTTGTTCTCGGAGATGCTCTGGTTGAATGGATGGCCCATGTAGTTTACAGCAAAGG
TTGCCACCTGGATCATCATGTTCACCATATATGAAACTGTGTTCACAAGGTTTGGAAGATATATGT