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Detailed information on CNT30672423


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179357Setaria viridisSecale cereale21.510.9393.4106forward
CNT30553525Setaria viridisOryza glaberrima27.9919.4993.48138forward
CNT30349408Setaria viridisEragrostis tef34.8915.6195.93172forward
CNT30596052Setaria viridisOryza meridionalis27.9925.3293.48138forward
CNT30101149Setaria viridisOryza rufipogon27.9925.3293.48138forward
CNT30498207Setaria viridisDigitaria exilis36.1134.5694.94178forward

Expression of CNT30672423

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MPMPSSQAAQLVAPHMTPSLSTRGMALSRFMGCSKLLRPPSLWNMHPTGKGAYDLPHPRLTMSRALQLRRL*

>peptide 2 (90 aa)
MAGEQKSSVSEYDLDAHAFVPGGPVGGAAHDALAVDPGHGLEPVHGVLEALEAALAVEHAPHGEGRVRLAASALDDVPSPAAAAAVGWSL*

Sequence

>CNT30672423
CACAAGCACAGGGAAATGTACAATGCCAAGAGGAGGAAGACAGAAGAGGAAGATATAGCTAAAACAAAGAGGCCATGAGAGACCCAGGCCTTCCAACGGA
AGCACTAGCCTCTGATTAGTCTGCTGATTTGGGATTAAGAAAGGGGGACATGACATGGCTGGTGAGCAGAAGAGCAGTGTCTCTGAATATGATCTAGATG
CCCATGCCTTCGTCCCAGGCGGCCCAGTTGGTGGCGCCGCACATGACGCCCTCGCTGTCGACCCGGGGCATGGCCTTGAGCCGGTTCATGGGGTGCTCGA
AGCTCTTGAGGCCGCCCTCGCTGTGGAACATGCACCCCACGGGGAAGGGCGCGTACGACTTGCCGCATCCGCGCTTGACGATGTCCCGAGCCCTGCAGCT
GCGGCGGCTGTAGGCTGGAGCCTGTAGCCTGTAGGTAGAAGAGGAGAGAAGAGAAGAGGGAGGGACGGATCTGAATGGGGAATGGAATGGAAT