Detailed information on CNT30672255


BLAST search results

BLAST vs Swiss-Prot:
sp|A5H452|PER70_MAIZE, E-value = 3e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694715Setaria viridisOryza sativa28.4412.0895120forward
CNT30178931Setaria viridisSecale cereale55.6937.0188.09235forward
CNT30221499Setaria viridisHordeum vulgare49.7672.1686.67210forward
CNT30386567Setaria viridisTriticum turgidum28.4433.7187.5120forward
CNT30596630Setaria viridisOryza meridionalis56.6431.1286.19239forward
CNT30370682Setaria viridisOryza glumipatula56.6429.5887.87239forward
CNT30102748Setaria viridisOryza rufipogon42.6523.5387.78180forward
CNT30577207Setaria viridisOryza barthii57.5827.888.07243forward
CNT30117210Setaria viridisOryza nivara48.8229.7787.38206forward

Expression of CNT30672255

Peptides detected in this lncRNA

>peptide 1 (58 aa)
TRLDGTRKASWHAISADACYFVMAVMRPYSFMSSFIRTHVYVYPSLYVITGSPRSMWS*

>peptide 2 (50 aa)
MLPILIMAVTKALLNADGLDAKLRTVLSVLPPLKSSWSECRSPFCDCRLV*

>peptide 3 (99 aa)
MCILACTLLRVRRGACGPDLALRPRQRADVAHLDHGSHEGAAERRRVGREVADRVVGAAAVEELLVGVQEPLLRLQVGVVGVVERGGRRRVQRRQVAVPV

Sequence

>CNT30672255
ACAAGACTTGATGGAACAAGAAAAGCGAGCTGGCATGCTATTTCAGCTGATGCTTGCTATTTTGTGATGGCTGTAATGAGACCTTATTCGTTCATGTCAT
CGTTTATTCGTACACACGTATATGTGTATCCTAGCTTGTACGTTATTACGGGTTCGCCGCGGAGCATGTGGTCCTGATCTGGCCTTGCGTCCCCGTCAGA
GGGCTGATGTTGCCCATCTTGATCATGGCAGTCACGAAGGCGCTGCTGAACGCCGACGGGTTGGACGCGAAGTTGCGGACCGTGTTGTCGGTGCTGCCGC
CGTTGAAGAGCTCCTGGTCGGAGTGCAGGAGCCCCTTCTGCGACTGCAGGTTGGTGTAGTAGGCGTTGTCGAACGCGGTGGCCGTCGCCGTGTCCAGCGG
CGCCAGGTTGCCGTCCCCGTTG