Detailed information on CNT30672185


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520324Setaria viridisSetaria italica44.2436.72100242forward
CNT30221871Setaria viridisHordeum vulgare21.025090.43115forward
CNT30251998Setaria viridisAvena sativa27.2451.7487.92149forward
CNT30659005Setaria viridisTriticum dicoccoides36.7570.7785.57201forward
CNT30450016Setaria viridisSaccharum spontaneum41.1320.3694.22225forward
CNT30680544Setaria viridisTriticum urartu35.6575.5885.64195forward
CNT30352666Setaria viridisEragrostis tef28.1519.0494.81154forward
CNT30362862Setaria viridisSorghum bicolor31.8134.3294.83174forward
CNT30370761Setaria viridisOryza glumipatula24.3113.4189.47133forward
CNT30147603Setaria viridisBrachypodium distachyon24.6845.382.96135forward
CNT30100764Setaria viridisOryza rufipogon18.136.6793.9499forward
CNT30496542Setaria viridisDigitaria exilis40.5919.9893.69222forward

Expression of CNT30672185

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MRRRKVDGVVGEERGDGGVVGCLVELVLSEPVVPEPGGGLDELPPLGREVLHLAVRRRDEERRVRVQRRRRHGHGAHPRFSFLLP

Sequence

>CNT30672185
AGTTCTAACATTAGACTGCTTGCCATCTTATATCCAACAACATGAACAAGGAGGAGGAGGAGTAGTATGATTCTACATCACTCCTTTTTTTTTGGTTGTT
TTTTTCTCTTTTCTAAGACAGCTCGATCGACCTGACCTGAACTGAACACGAGAAACTACAAGGAGAGGAGATCACCAGCAGACGCCTTGGTTGATTCTCT
CCTCTCTCTTTTTAGTTGTATACACAGAAACAGACTACTAAGCTTGAAGTTACACTGGACAGCAGCGGCAGCAGCCATCGTCGGTCGTCGCCATGAGACG
AAGAAAGGTCGACGGAGTCGTCGGGGAGGAGCGCGGCGACGGCGGCGTCGTAGGCTGCCTCGTGGAGCTGGTGCTGTCGGAACCAGTGGTCCCGGAACCA
GGCGGTGGTCTTGACGAGCTCCCACCACTCGGGCGAGAAGTCCTCCACCTGGCGGTACGCCGCCGGGATGAAGAGCGGCGCGTTCGGGTTCAGCGACGAC
GACGCCATGGCCATGGTGCTCATCCTCGGTTCTCCTTTCTACTACCT