Detailed information on CNT30671966


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F1U0|PER22_ORYSJ, E-value = 8e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30659540Setaria viridisTriticum dicoccoides53.6649.381.25176forward
CNT30117253Setaria viridisOryza nivara58.8425.8488.08193forward

Expression of CNT30671966

Peptides detected in this lncRNA

>peptide 1 (72 aa)
RYYGFAAEHVVLIWPCVPVRGLMLPILIMAVTKALLNADGLDAKLRTVLSVLPPLKSSWSECRSPFCDCRLL*

>peptide 2 (98 aa)
TLLRVRRGACGPDLALRPRQRADVAHLDHGSHEGAAERRRVGREVADRVVGAAAVEELLVGVQEPLLRLQVAVVGVVERVGRRCLRRRHRGHAEQQQD*

Sequence

>CNT30671966
ACGTTATTACGGGTTCGCCGCGGAGCATGTGGTCCTGATCTGGCCTTGCGTCCCCGTCAGAGGGCTGATGTTGCCCATCTTGATCATGGCAGTCACGAAG
GCGCTGCTGAACGCCGACGGGTTGGACGCGAAGTTGCGGACCGTGTTGTCGGTGCTGCCGCCGTTGAAGAGCTCCTGGTCGGAGTGCAGGAGCCCCTTCT
GCGACTGCAGGTTGCTGTAGTAGGCGTTGTCGAACGTGTAGGGCGTCGATGTCTGCGCCGACGCCACCGCGGCCATGCAGAGCAGCAGCAAGACTGAAAC
CGAAGACGCCATGGCGAGCAGAGCACGT