Detailed information on CNT30671850


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F1U0|PER22_ORYSJ, E-value = 1e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30348947Setaria viridisEragrostis tef31.3531.4988.03142forward
CNT30604331Setaria viridisOryza punctata44.1529.0389200forward

Expression of CNT30671850

Peptides detected in this lncRNA

>peptide 1 (58 aa)
TRLDGTRKASWHAISADACYFVMAVMRPYSFMSSFIRTHVYVYPSLYVITGSPRSMWS*

>peptide 2 (51 aa)
MLPILIMAVTKALLNADGLDAKLRTVLSVLPPLKSSWSECRSPFCDCRFLK*

>peptide 3 (97 aa)
MCILACTLLRVRRGACGPDLALRPRQRADVAHLDHGSHEGAAERRRVGREVADRVVGAAAVEELLVGVQEPLLRLQVLEVGVVERVGRRRVQRRHCY*

Sequence

>CNT30671850
ACAAGACTTGATGGAACAAGAAAAGCGAGCTGGCATGCTATTTCAGCTGATGCTTGCTATTTTGTGATGGCTGTAATGAGACCTTATTCGTTCATGTCAT
CGTTTATTCGTACACACGTATATGTGTATCCTAGCTTGTACGTTATTACGGGTTCGCCGCGGAGCATGTGGTCCTGATCTGGCCTTGCGTCCCCGTCAGA
GGGCTGATGTTGCCCATCTTGATCATGGCAGTCACGAAGGCGCTGCTGAACGCCGACGGGTTGGACGCGAAGTTGCGGACCGTGTTGTCGGTGCTGCCGC
CGTTGAAGAGCTCCTGGTCGGAGTGCAGGAGCCCCTTCTGCGACTGCAGGTTCTTGAAGTAGGCGTTGTCGAACGCGTTGGGCGTCGTCGTGTCCAGCGG
CGCCATTGTTATTAGCTACAAGACCAGATTATTTTGGGTTACCCGTGGTCTGC