Detailed information on CNT30671768


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2LGZ2|ATPG_VIGUN, E-value = 4e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554409Setaria viridisOryza glaberrima43.1716.6794.87234forward
CNT3012827Setaria viridisZea mays46.3115.5596.81251forward
CNT30596670Setaria viridisOryza meridionalis45.9441.0995.18249forward
CNT30577183Setaria viridisOryza barthii45.9423.2595.18249forward
CNT30117211Setaria viridisOryza nivara45.9421.195.18249forward

Expression of CNT30671768

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MDPRRRGSTPAAAVAEEGVEGRGAGWEGGKWVWMDWV

>peptide 2 (59 aa)
GITDRLNSKKARERIIYSRSTAPRKNATTGSARLSFSIRRTAQAQPARASAMERIWLLR*

Sequence

>CNT30671768
CAGGAATTACAGACAGACTGAACAGCAAGAAGGCGAGAGAAAGAATTATATATAGCAGGAGCACCGCACCAAGAAAGAACGCCACCACCGGCTCAGCTCG
GCTCAGTTTTAGTATAAGGAGGACGGCTCAAGCTCAGCCAGCGAGGGCGTCGGCGATGGAGAGGATCTGGCTGTTGAGGTAGAGCGGGAGCAGCGCGTCG
AGGATCTGCACGGGGTCCTGCTCGAACTGCACCACGGGGGAGAAGGGCTGCGTCTCGATCTTCACCTTCTCGCGCTCCACGGTGAGCTTCCCCTCCTTGG
TGGTGAGGCGGAACAGCTCGTCCTCCGTGGCGTCCACGCACACGCCGTTGACGTCGCAGATCTCCCCCTTGGGGGACATGGGCAGCAGCGTCTGGATGAT
GGGGTGGGAGCACGACATGGCTGGCTGGTGATGGATCCGCGGCGACGGGGATCAACACCAGCGGCGGCGGTGGCGGAGGAGGGAGTGGAAGGGAGAGGGG
CGGGATGGGAGGGAGGGAAATGGGTTTGGATGGATTGGGTTT